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permit atomic input to deformAtoms #1304

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Job	Run time
build (2.7)	8m 59s
build (3.8)	30m 22s
build (3.9)	29m 55s
build (3.10)	31m 22s
build (3.11)	32m 9s
build (3.12)	31m 39s
	2h 44m 26s