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permit atomic input to deformAtoms #1303

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Job	Run time
build (2.7)	6m 50s
build (3.8)	28m 38s
build (3.9)	28m 26s
build (3.10)	28m 49s
build (3.11)	31m 4s
build (3.12)	31m 23s
	2h 35m 10s