Update deal.II parameter files

[davidscn]

Related to precice/dealii-adapter#54

..and centralize run scripts.

[MakisH]

Thanks a lot, you are one step ahead of me! I wanted to take care of the run scripts today. Here are some comments to consider.

[BenjaminRodenberg]

I just tried the new -e option and got the following error:

~/tutorials/perpendicular-flap/solid-dealii$ ./run.sh -e=/home/benjamin/dealii-adapter/linear_elasticity/linear_elasticity
-----------------------------------------------------------------------------
--     . adapter revision f9c2c65 on branch develop
--     . deal.II 9.2.0 (revision unknown)
-----------------------------------------------------------------------------



----------------------------------------------------
Exception on processing: 

--------------------------------------------------------
An error occurred in line <538> of file </build/deal.ii-vFp8uU/deal.ii-9.2.0/source/base/parameter_handler.cc> in function
    virtual void dealii::ParameterHandler::parse_input(const string&, const string&, bool, bool)
The violated condition was: 
    is
Additional information: 
    The file "linear_elasticity.prm" was not found in the path for files of class ParameterHandler.
--------------------------------------------------------

Aborting!
----------------------------------------------------

This looks to me like the linear_elasticity.prm file is not found correctly. I tried to solve the problem by copy-pasting the file to the directory from which I'm running the case, but ran into the next problem.

I finally went back to an older revision (a166efa) ran the simulation by adding the folder to the path.

[davidscn]

@BenjaminRodenberg please update the dealii-adapter develop branch. The executable has been renamed and you can trigger the building from the top-level directory.