bumps version to 1.92

powellgenomicslab · Jul 11, 2021 · a14a344 · a14a344
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: scPred
 Type: Package
 Title: scPred - accurate supervised method for cell-type classification from single-cell RNA-seq data
-Version: 1.9.1
+Version: 1.9.2
 Author: c(person("Jose", "Alquicira-Hernandez", email = "[email protected]", rol = "aut, cre", comment = c(ORCID = "0000-0002-9049-7780")))
 Maintainer: Jose Alquicira-Hernandez <[email protected]>
 Description: Provides a series of functions to train a prediction model based on gene expression data to classify single cells.
@@ -24,6 +24,8 @@ Imports:
     pbapply,
     cli,
     crayon
+Suggests:
+    magrittr, mda
 Remotes:
     immunogenomics/harmony
 RoxygenNote: 7.1.1
diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/articles/introduction.html b/docs/articles/introduction.html
diff --git a/docs/articles/introduction_files/figure-html/plot_umap-1.png b/docs/articles/introduction_files/figure-html/plot_umap-1.png
diff --git a/docs/articles/introduction_files/figure-html/unnamed-chunk-10-1.png b/docs/articles/introduction_files/figure-html/unnamed-chunk-10-1.png
diff --git a/docs/articles/introduction_files/figure-html/unnamed-chunk-11-1.png b/docs/articles/introduction_files/figure-html/unnamed-chunk-11-1.png
diff --git a/docs/articles/introduction_files/figure-html/unnamed-chunk-12-1.png b/docs/articles/introduction_files/figure-html/unnamed-chunk-12-1.png
diff --git a/docs/articles/introduction_files/figure-html/unnamed-chunk-16-1.png b/docs/articles/introduction_files/figure-html/unnamed-chunk-16-1.png
diff --git a/docs/articles/introduction_files/figure-html/unnamed-chunk-3-1.png b/docs/articles/introduction_files/figure-html/unnamed-chunk-3-1.png
diff --git a/docs/articles/introduction_files/figure-html/unnamed-chunk-6-1.png b/docs/articles/introduction_files/figure-html/unnamed-chunk-6-1.png
diff --git a/docs/articles/introduction_files/figure-html/unnamed-chunk-8-1.png b/docs/articles/introduction_files/figure-html/unnamed-chunk-8-1.png
diff --git a/docs/articles/introduction_files/header-attrs-2.9/header-attrs.js b/docs/articles/introduction_files/header-attrs-2.9/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/pkgdown.css b/docs/pkgdown.css
@@ -244,14 +244,14 @@ nav[data-toggle='toc'] .nav .nav > .active:focus > a {
 
 .ref-index th {font-weight: normal;}
 
-.ref-index td {vertical-align: top;}
+.ref-index td {vertical-align: top; min-width: 100px}
 .ref-index .icon {width: 40px;}
 .ref-index .alias {width: 40%;}
 .ref-index-icons .alias {width: calc(40% - 40px);}
 .ref-index .title {width: 60%;}
 
 .ref-arguments th {text-align: right; padding-right: 10px;}
-.ref-arguments th, .ref-arguments td {vertical-align: top;}
+.ref-arguments th, .ref-arguments td {vertical-align: top; min-width: 100px}
 .ref-arguments .name {width: 20%;}
 .ref-arguments .desc {width: 80%;}
 

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -1,7 +1,7 @@
-pandoc: 2.9.2.1
-pkgdown: 1.5.1
+pandoc: 2.11.4
+pkgdown: 1.6.1
 pkgdown_sha: ~
 articles:
   introduction: introduction.html
-last_built: 2020-09-14T07:52Z
+last_built: 2021-07-11T15:26Z
 
diff --git a/docs/reference/Rplot001.png b/docs/reference/Rplot001.png
diff --git a/docs/reference/crossTab-Seurat-method.html b/docs/reference/crossTab-Seurat-method.html
diff --git a/docs/reference/crossTab.html b/docs/reference/crossTab.html