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The purpose of this repository is to provide instructions for pre-imputation processing and imputation on hg19 using the Sanger Imputation Server. This was the original approach for the sceQTL-Gen Consortium but was changed to hg38 imputation on 30 August, 2021 so the hg19 instructions were moved here

If you have any questions or issues, feel free to open an issue or directly email Drew Neavin (d.neavin @ garvan.org.au)