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A simple utility for executing multiple sequential or multi-threaded applications in a single multi-node batch job
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poldracklab/launcher
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------------------------------------------------------------------------- Launcher: a simple utility for submitting multiple serial applications simultaneously. ------------------------------------------------------------------------- To use: * Set LAUNCHER_JOB_FILE to point to your job file. Example job files are provided in extras/examples. * Be sure that LAUNCHER_DIR is set to the directory containing the launcher source files (user-installed ONLY. Not required if using system installed version of launcher). * From the command-line or within your jobscript, run: $LAUNCHER_DIR/paramrun Available Environment Variables: You should set the following environment variables: * $LAUNCHER_JOB_FILE is the file containing the jobs to run in your parametric submission. * $LAUNCHER_WORKDIR is the directory where the launcher will execute. All relative paths will resolve to this directory. The launcher defines the following environment variables for each job that is started: * $LAUNCHER_NPROCS contains the number of processes running simultaneously in your parametric submission. * $LAUNCHER_NHOSTS contains the number of hosts running simultaneously in your parametric submission. * $LAUNCHER_PPN contains the number of processes per node. * $LAUNCHER_NJOBS contains the number of jobs in your paramfile. * $LAUNCHER_TSK_ID is the particular processing core that the job is running on, from 0 to $LAUNCHER_NPROCS-1. * $LAUNCHER_JID represents the particular job instance currently running. $LAUNCHER_JID is numbered from 1 to $LAUNCHER_NJOBS. Example: If you want to redirect stdout to a file containing the unique ID of each line, you can specify the following in the paramlist file: a.out > out.o$LAUNCHER_JID If this particular execution instance of a.out was the first line in the paramlist file, the output would be placed in the file "out.o1". Note: you can also use the launcher to run a sequence of serial jobs when you have more jobs to run than the requested number of processors. Task Scheduling Behavior: The launcher has three available behaviors for scheduling jobs, available by setting the environment variable $LAUNCHER_SCHED: (descriptions below assume k = task, p = num. procs, n = num. jobs) * dynamic (default) - each task k executes first available unclaimed line * interleaved - each task k executes every (k+p)th line * block - each task k executes lines [ k(n/p)+1, (k+1)(n/p) ] Using the launcher with Intel Xeon Phi cards: The launcher has the ability to execute appropriately compiled executables natively on Intel Xeon Phi (MIC) cards. Available Environment Variables for Intel Xeon Phi execution: * $LAUNCHER_NPHI is the number of Intel Xeon Phi cards per node. This is set to zero (0) by default. Acceptable values are '1' and '2'. * $LAUNCHER_PHI_PPN is the number of processes per Intel Xeon Phi card. * $LAUNCHER_PHI_JOB_FILE is the file containing the jobs to run on the Intel Xeon Phi cards. Job Submission: Copy the example job submission script "launcher.<sched>" to your working directory to use as a starting point for interfacing with the desired batch system. Note that this script provides some simple error checking prior to the actual submission to aid in diagnosing missing executables and misconfiguration. The directory containing this README contains several example submission scripts: SGE: launcher.sge SLURM: launcher.slurm -- Last Update: 12/08/2015
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A simple utility for executing multiple sequential or multi-threaded applications in a single multi-node batch job
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