run canu as shadow rule to reduce disk space usage

and add comment about Medaka's default model to README
pmenzel · Mar 5, 2024 · f4d6add · f4d6add
1 parent c65ee58
commit f4d6add
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diff --git a/README.md b/README.md
@@ -215,6 +215,8 @@ sample1     r941_min_high_g330
 sample2     r941_min_high_g351
 ```
 
+If no model is specified, Medaka will use the `r941_min_hac_g507` model by default.
+
 ### pilon
 
 **`pilon`**  

diff --git a/Snakefile b/Snakefile
@@ -479,6 +479,8 @@ rule canu:
     threads: 5
     resources:
         mem_mb=12000,
+    shadow:
+        "minimal"
     input:
         fqont=get_ont_fq,
     output: