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pharmbio · Sep 30, 2024 · 25f9274 · 25f9274
1 parent 939e58a
commit 25f9274
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Showing 3 changed files with 19 additions and 26 deletions.
diff --git a/.inputrc b/.inputrc
@@ -86,3 +86,14 @@ set enable-bracketed-paste
 set enable-bracketed-paste
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+set enable-bracketed-paste
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+set enable-bracketed-paste
+set enable-bracketed-paste
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+set enable-bracketed-paste
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diff --git a/build-local-docker.sh b/build-local-docker.sh
@@ -11,11 +11,11 @@ echo "tag=$tag"
 echo "image=$image"
 #switch to buildx build
 # Build docker image for this container.
-docker buildx build --no-cache -t ghcr.io/pharmbio/$image:$tag-devel \
-             --build-arg BASE_IMAGE=tensorflow/tensorflow:${tensorflow_version}-jupyter \
-             --build-arg FRAMEWORK=cpu \
-             -f ./docker/env.Dockerfile . || exit 1
-docker buildx build --no-cache -t ghcr.io/pharmbio/$image:${tag}-gpu-devel \
+# docker buildx build --no-cache -t ghcr.io/pharmbio/$image:$tag \
+#              --build-arg BASE_IMAGE=tensorflow/tensorflow:${tensorflow_version}-jupyter \
+#              --build-arg FRAMEWORK=cpu \
+#              -f ./docker/env.Dockerfile . || exit 1
+docker buildx build --no-cache -t ghcr.io/pharmbio/$image:${tag}-gpu \
              --build-arg BASE_IMAGE=tensorflow/tensorflow:${tensorflow_version}-gpu-jupyter \
              --build-arg FRAMEWORK=cuda \
              -f docker/env.Dockerfile . || exit 1

diff --git a/docker/env.Dockerfile b/docker/env.Dockerfile
@@ -67,15 +67,6 @@ RUN <<EOF
                         torch==2.2.1 \
                         torchvision \
                         torchaudio;
-                python3 -m pip install --no-cache-dir \ 
-                        pytorch_toolbelt;
-                # python3 -m pip install --no-cache-dir -f https://data.pyg.org/whl/torch-2.2.0+cu121.html \
-                #         pyg-lib \
-                #         torch-scatter \
-                #         torch-sparse \
-                #         torch-cluster \
-                #         torch-spline-conv \
-                #         torch-geometric;
                 python3 -m pip install \
                         --extra-index-url=https://pypi.nvidia.com \
                         cudf-cu12==24.6.* dask-cudf-cu12==24.6.* cuml-cu12==24.6.* \
@@ -88,15 +79,6 @@ RUN <<EOF
                         torch==2.2.1 \
                         torchvision \
                         torchaudio;
-                python3 -m pip install --no-cache-dir 
-                        pytorch_toolbelt ;
-                # python3 -m pip install --no-cache-dir -f https://data.pyg.org/whl/torch-2.2.0+cpu.html \
-                #         pyg-lib \
-                #         torch-scatter \
-                #         torch-sparse \
-                #         torch-cluster \
-                #         torch-spline-conv \
-                #         torch-geometric; 
         else 
         echo "Error: unknown hardware" 
         exit 1 
@@ -109,9 +91,9 @@ EOF
 
 
 # Add pharmbio templates, examples and misc
-WORKDIR /pharmbio/
-COPY README.md .
-COPY notebooks/* ./notebooks/
+#WORKDIR /pharmbio/
+#COPY README.md .
+#COPY notebooks/* ./notebooks/
 
 # Custom bashrc
 COPY bash.bashrc /etc/bash.bashrc