r-cmd-check #146
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# Download the stock synthesis executable, then Run r cmd check | |
# Name of the workflow, which will be what it is called under the "actions" tab | |
name: r-cmd-check | |
# on specifies the build triggers. Learn more at https://docs.github.com/en/actions/using-workflows/events-that-trigger-workflows | |
on: | |
# The schedule build trigger runs the workflow at a scheduled time. | |
schedule: | |
# This should run the default branch (typically main) weekly on sunday at 2:45am UTC | |
- cron: '01 3 * * 2' | |
# The workflow_dispatch build trigger adds a button so that you can start workflows manually. | |
workflow_dispatch: | |
# The push build trigger runs jobs when new commits are pushed up to github. | |
push: | |
# specifying branches means the workflow will only run on pushes to the branches listed, in this case, only main | |
branches: | |
- main | |
- r4ss_1.50.0 | |
# The pull_request build trigger runs jobs when a pull request is made or commits are pushed to the pull request. | |
pull_request: | |
# specifying branches means the workflow will only run when the pull request is to the merge into the branch listed, in this case, main. | |
branches: | |
- main | |
# jobs specifies the jobs to run. you can have multiple jobs per github actions workflow, but in this case we have only one, which is | |
# named run-R-CMD-check. | |
jobs: | |
run-R-CMD-check: | |
# the operating system to run on | |
runs-on: 'ubuntu-latest' | |
strategy: | |
fail-fast: false | |
# environment settings, needed for running r (first 2 settings) and downloading from github (GITHUB_PAT) | |
env: | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- name: Checkout github repository, in this case nwfscDiags | |
uses: actions/checkout@v3 | |
- name: Set up R | |
uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: 'release' | |
- name: Setup pandoc, in case of vignettes in the R package | |
uses: r-lib/actions/setup-pandoc@v2 | |
- name: Setup R packages | |
uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
extra-packages: any::rcmdcheck | |
needs: check | |
- name: Get the latest SS3 executable and move to expected location | |
run: | | |
wget -O ss3 https://github.com/nmfs-ost/ss3-source-code/releases/latest/download/ss3_linux | |
sudo chmod a+x ss3 | |
cp ss3 inst/extdata/simple_small/ss3 | |
rm ss3 | |
- name: run r-cmd-check using R | |
env: | |
_R_CHECK_CRAN_INCOMING_REMOTE_: false | |
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "error", check_dir = "check") | |
shell: Rscript {0} | |
- name: Show testthat output | |
if: always() | |
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
shell: bash | |
- name: Upload check results | |
if: failure() | |
uses: actions/upload-artifact@main | |
with: | |
name: 'linux-release-results' | |
path: check |