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r-cmd-check

r-cmd-check #146

Workflow file for this run

# Download the stock synthesis executable, then Run r cmd check
# Name of the workflow, which will be what it is called under the "actions" tab
name: r-cmd-check
# on specifies the build triggers. Learn more at https://docs.github.com/en/actions/using-workflows/events-that-trigger-workflows
on:
# The schedule build trigger runs the workflow at a scheduled time.
schedule:
# This should run the default branch (typically main) weekly on sunday at 2:45am UTC
- cron: '01 3 * * 2'
# The workflow_dispatch build trigger adds a button so that you can start workflows manually.
workflow_dispatch:
# The push build trigger runs jobs when new commits are pushed up to github.
push:
# specifying branches means the workflow will only run on pushes to the branches listed, in this case, only main
branches:
- main
- r4ss_1.50.0
# The pull_request build trigger runs jobs when a pull request is made or commits are pushed to the pull request.
pull_request:
# specifying branches means the workflow will only run when the pull request is to the merge into the branch listed, in this case, main.
branches:
- main
# jobs specifies the jobs to run. you can have multiple jobs per github actions workflow, but in this case we have only one, which is
# named run-R-CMD-check.
jobs:
run-R-CMD-check:
# the operating system to run on
runs-on: 'ubuntu-latest'
strategy:
fail-fast: false
# environment settings, needed for running r (first 2 settings) and downloading from github (GITHUB_PAT)
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- name: Checkout github repository, in this case nwfscDiags
uses: actions/checkout@v3
- name: Set up R
uses: r-lib/actions/setup-r@v2
with:
r-version: 'release'
- name: Setup pandoc, in case of vignettes in the R package
uses: r-lib/actions/setup-pandoc@v2
- name: Setup R packages
uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::rcmdcheck
needs: check
- name: Get the latest SS3 executable and move to expected location
run: |
wget -O ss3 https://github.com/nmfs-ost/ss3-source-code/releases/latest/download/ss3_linux
sudo chmod a+x ss3
cp ss3 inst/extdata/simple_small/ss3
rm ss3
- name: run r-cmd-check using R
env:
_R_CHECK_CRAN_INCOMING_REMOTE_: false
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "error", check_dir = "check")
shell: Rscript {0}
- name: Show testthat output
if: always()
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash
- name: Upload check results
if: failure()
uses: actions/upload-artifact@main
with:
name: 'linux-release-results'
path: check