cut down BIDS test files to 1 slice, update run_DCE.yml

.github/workflows/run_DCE.yml

@@ -21,11 +21,12 @@ jobs:
     runs-on: ${{ matrix.os }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - name: Set up MATLAB
         uses: matlab-actions/setup-matlab@v2
         with:
+          products: Curve_Fitting_Toolbox Image_Processing_Toolbox Optimization_Toolbox Parallel_Computing_Toolbox Statistics_and_Machine_Learning_Toolbox
           release: ${{ matrix.release }}
 
       #- name: Get MATLAB toolboxes with mpm
@@ -36,16 +37,16 @@ jobs:
       - name: Run T1 mapping
         uses: matlab-actions/run-command@v2
         with:
-          command: addpath .; addpath dce/; addpath external_programs/; addpath external_programs/niftitools/; addpath parametric_scripts/; addpath parametric_scripts/custom_scripts/; T1mapping_fit('test_data/BIDS_test/rawdata/sub-01/ses-01/anat/', 'test_data/BIDS_test/derivatives/sub-01/ses-01/anat/', 'sub-01_ses-01_space-DCEref_desc-bfczunified_VFA.nii')
+          command: addpath .; addpath dce/; addpath external_programs/; addpath external_programs/niftitools/; addpath parametric_scripts/; addpath parametric_scripts/custom_scripts/; T1mapping_fit('test_data/BIDS_test/rawdata/sub-01/ses-01/anat/', 'test_data/BIDS_test/derivatives/sub-01/ses-01/anat/', 'sub-01_ses-01_space-DCEref_desc-bfczunified_VFA.nii.gz')
 
       - name: Run DCE
         uses: matlab-actions/run-command@v2
         with:
-          command: run_dce_cli('test_data/BIDS_test/derivatives/sub-01/ses-01/')
+          command: run_dce_cli('test_data/BIDS_test/derivatives/sub-01/ses-01/', 'test_data/BIDS_test/rawdata/sub-01/ses-01/')
 
       - name: Upload Ktrans result
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: Ktrans_result
-          path: test\ data/test2/dce_patlak_fit_Ktrans.nii
+          path: test_data/BIDS_test/derivatives/sub-01/ses-01/dce_patlak_fit_Ktrans.nii