use fit instead of lsqcurvefit in AIFbiexpcon + weighting support, mi… #94
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| name: CI | |
| # Controls when the workflow will run | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - dev | |
| pull_request: | |
| branches: | |
| - master | |
| - dev | |
| jobs: | |
| build: | |
| strategy: | |
| #fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, ubuntu-20.04] | |
| release: [R2020b, R2021a, R2022a] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up MATLAB | |
| uses: matlab-actions/setup-matlab@v2 | |
| with: | |
| products: Curve_Fitting_Toolbox Image_Processing_Toolbox Optimization_Toolbox Parallel_Computing_Toolbox Statistics_and_Machine_Learning_Toolbox | |
| release: ${{ matrix.release }} | |
| #- name: Get MATLAB toolboxes with mpm | |
| # run: | | |
| # wget https://www.mathworks.com/mpm/glnxa64/mpm | |
| # chmod +x mpm | |
| # ./mpm install --release=${{ matrix.release }} --products MATLAB Statistics_and_Machine_Learning_Toolbox Parallel_Computing_Toolbox Curve_Fitting_Toolbox | |
| - name: Run T1 mapping | |
| uses: matlab-actions/run-command@v2 | |
| with: | |
| command: addpath .; addpath dce/; addpath external_programs/; addpath external_programs/niftitools/; addpath parametric_scripts/; addpath parametric_scripts/custom_scripts/; T1mapping_fit('test_data/BIDS_test/rawdata/sub-01/ses-01/anat/', 'test_data/BIDS_test/derivatives/sub-01/ses-01/anat/', 'sub-01_ses-01_space-DCEref_desc-bfczunified_VFA.nii') | |
| - name: Run DCE | |
| uses: matlab-actions/run-command@v2 | |
| with: | |
| command: run_dce_cli('test_data/BIDS_test/rawdata/sub-01/ses-01/', 'test_data/BIDS_test/derivatives/sub-01/ses-01/') | |
| - name: Upload Ktrans result | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Ktrans_result_${{ matrix.os }}-${{ matrix.release }} | |
| path: test_data/BIDS_test/derivatives/sub-01/ses-01/dce/dce_patlak_fit_Ktrans.nii | |
| retention-days: 7 | |
| if-no-files-found: error | |