…ulPhyS.cpp

…ositive values.

…odduc due to interpolation error so we force this value to zero in face_integrator.cpp and BCintegrator.cpp. We also check for negative values at the end of the iteration with Check_undershoot. undershoot can occur due to discretisation error in the solution of the transport equation. The use of a TVD scheme could mitigate this effect.

… electron number density approaches zero at remote regions and Te goes to inf. We need to think how to address this one.

…field is to be read by the P1 stand-alone code.

…s been modified to add options for the P1 model. some h5 files related to P1 have been added to test/rad-data

…tions. It is a low level class. Currently it can huddle specific reactions for our specific chemistry model like Ar(4p) -> Ar(r), Ar(4p) -> Ar(m), and Ar(r) -> Ar(g). It calculates the effective Einstein A coefficients for these reactions based on the A coef of the transitions involved with these lumped species. For the number densities of the internal states, we just assume that they are bolzmann distributed at a given Te evaluated by the model. The method also calculates the escape factors and consider them in the evaluation of the effective A coef.

… SetStateIndices and SetSpeciesIndices in class GasMixture to set an idenx system for the sate variables and species variables. These indeces are used in GasMixture and derived classes.

…changes in h5ReadTable. h5ReadTable now gets groupName as an extra argument.

… radiation_ class that was causing some tests to fail.

…diation model that caused some tests to fail.

…fail

…the plasma.lte1/2d.ini input files.