add profile to a few wrappers where it was missing

pavanvidem · Dec 3, 2024 · 2278167 · 2278167
1 parent 079ef94
commit 2278167
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Showing 8 changed files with 9 additions and 9 deletions.
diff --git a/tools/hicexplorer/chicSignificantInteractions.xml b/tools/hicexplorer/chicSignificantInteractions.xml
@@ -1,4 +1,4 @@
-<tool id="hicexplorer_chicsignificantinteractions" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="hicexplorer_chicsignificantinteractions" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>computes viewpoints with the given reference points and a background model</description>
     <macros>
         <token name="@BINARY@">chicSignificantInteractions</token>

diff --git a/tools/hicexplorer/chicViewpoint.xml b/tools/hicexplorer/chicViewpoint.xml
@@ -1,4 +1,4 @@
-<tool id="hicexplorer_chicviewpoint" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="hicexplorer_chicviewpoint" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>computes viewpoints with the given reference points and a background model.</description>
     <macros>
         <token name="@BINARY@">chicViewpoint</token>

diff --git a/tools/hicexplorer/chicViewpointBackgroundModel.xml b/tools/hicexplorer/chicViewpointBackgroundModel.xml
@@ -1,4 +1,4 @@
-<tool id="hicexplorer_chicviewpointbackgroundmodel" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="hicexplorer_chicviewpointbackgroundmodel" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>compute a background model for cHi-C / HiChIP data</description>
     <macros>
         <token name="@BINARY@">chicViewpointBackgroundModel</token>

diff --git a/tools/hicexplorer/hicAdjustMatrix.xml b/tools/hicexplorer/hicAdjustMatrix.xml
@@ -1,4 +1,4 @@
-<tool id="hicexplorer_hicadjustmatrix" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="hicexplorer_hicadjustmatrix" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>adjust the shape of a Hi-C matrix</description>
     <macros>
         <token name="@BINARY@">hicAdjustMatrix</token>

diff --git a/tools/hicexplorer/hicAggregateContacts.xml b/tools/hicexplorer/hicAggregateContacts.xml
@@ -1,4 +1,4 @@
-<tool id="hicexplorer_hicaggregatecontacts" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="hicexplorer_hicaggregatecontacts" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>allow plotting of aggregated Hi-C contacts between regions specified in a file</description>
     <macros>
         <token name="@BINARY@">hicAggregateContacts</token>

diff --git a/tools/hicexplorer/hicAverageRegions.xml b/tools/hicexplorer/hicAverageRegions.xml
@@ -1,4 +1,4 @@
-<tool id="hicexplorer_hicaverageregions" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="hicexplorer_hicaverageregions" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>sums Hi-C contacts around given reference points and computes their average.</description>
     <macros>
         <token name="@BINARY@">hicAverageRegions</token>

diff --git a/tools/hicexplorer/hicBuildMatrix.xml b/tools/hicexplorer/hicBuildMatrix.xml
@@ -1,11 +1,11 @@
-<tool id="hicexplorer_hicbuildmatrix" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="hicexplorer_hicbuildmatrix" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>create a contact matrix</description>
     <macros>
         <token name="@BINARY@">hicBuildMatrix</token>
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements">
-        <requirement type="package" version="1.19">samtools</requirement>
+        <requirement type="package" version="1.21">samtools</requirement>
     </expand>
     <command detect_errors="exit_code"><![CDATA[
 

diff --git a/tools/hicexplorer/hicBuildMatrixMicroC.xml b/tools/hicexplorer/hicBuildMatrixMicroC.xml
@@ -1,4 +1,4 @@
-<tool id="hicexplorer_hicbuildmatrixmicroc" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="hicexplorer_hicbuildmatrixmicroc" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>create a contact matrix</description>
     <macros>
         <token name="@BINARY@">hicBuildMatrixMicroC</token>