✅ reduce default memory to fix tests

papaemmelab · Aug 7, 2024 · b4e9645 · b4e9645
1 parent b763c14
commit b4e9645
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Showing 2 changed files with 3 additions and 5 deletions.
diff --git a/main.nf b/main.nf
@@ -1,5 +1,5 @@
 params.cores = 4
-params.memory = '32 GB'
+params.memory = '4 GB'
 
 // Params Defaults in juno
 params.refGenome = "/work/isabl/ref/homo_sapiens/GRCh37d5/gr37.fasta"
@@ -228,6 +228,8 @@ process runPurple {
  -circos ${params.circos} \
  -min_purity ${params.minPurity} \
  -max_purity ${params.maxPurity}
+
+ rsync -a --no-links \$PWD/ ${params.outdir}/purple/
  """.stripIndent()
 }
 

diff --git a/nf-test.config b/nf-test.config
@@ -5,8 +5,4 @@ config {
  configFile "tests/nextflow.config"
  profile "cloud"
 
- params {
- memory = '4 GB'
- }
-
 }