🛠️ add hpc_slurm profile

papaemmelab · Jul 19, 2024 · 801eaad · 801eaad
1 parent 5037488
commit 801eaad
Showing 1 changed file with 21 additions and 1 deletion.
diff --git a/nextflow.config b/nextflow.config
@@ -23,13 +23,33 @@ profiles {
  standard {
  process.executor = 'local'
  }
- hpc {
+
+ hpc_lsf {
  singularity.enabled = true
  singularity.autoMounts = true
  process {
  executor = 'lsf'
  }
  }
+
+ hpc_slurm {
+ singularity.enabled = true
+ singularity.autoMounts = true
+ process {
+ executor = 'slurm'
+ queue = 'componc_cpu'
+ withname:runPurple {
+ container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif'
+ }
+ withname:runAmber {
+ container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif'
+ }
+ withname:runCobalt {
+ container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif'
+ }
+ }
+ }
+
  cloud {
  docker {
  enabled = true