Skip to content

Python package and routines for merging SV VCF files

License

Notifications You must be signed in to change notification settings

papaemmelab/mergeSVvcf

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

31 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Merge SV VCFs

This set of routines merges SV VCF files by calls, labeling calls by the callers that made them in an INFO field, Callers=. Most of the work goes into normalizing SV calls, which are treated as paired of breakpoints that are equal if they fall within a user-specified window.

Known Issues

  • INFO and FORMAT merged for multiple from same caller with only be for last record
  • Individual Caller Genotype not kept

About

Python package and routines for merging SV VCF files

Resources

License

Stars

Watchers

Forks

Packages

No packages published

Languages

  • Python 71.4%
  • Cython 28.6%