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Merge pull request #368 from pangenome/update-stuff
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update smoothxg (abPOA)
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AndreaGuarracino authored Jan 16, 2024
2 parents 4b7aa9c + 1fa28f7 commit 4abfa17
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -72,7 +72,7 @@ RUN git clone --recursive https://github.com/ekg/seqwish \
RUN git clone --recursive https://github.com/pangenome/smoothxg \
&& cd smoothxg \
&& git pull \
&& git checkout 620d1d48388ae39bc1f1680fa8b03323bad71e55 \
&& git checkout 9970e0df187c5e1234ace61243f30ddccbbbbdd8 \
&& git submodule update --init --recursive \
&& sed -i 's/-msse4.1/-march=sandybridge -Ofast/g' deps/spoa/CMakeLists.txt \
&& sed -i 's/-march=native/-march=sandybridge -Ofast/g' deps/spoa/CMakeLists.txt \
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