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add macos to CI#513

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kojix2 wants to merge 41 commits intopangenome:masterpangenome/odgi:masterfrom kojix2:kojix2-macos-cikojix2/odgi:kojix2-macos-ciCopy head branch name to clipboard

+584-87

Commits

Commits on Jun 21, 2023

• add macos to CI

  kojix2

  committed
  f2e09c8

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• update workflow to trigger on push and pull_request

  kojix2

  committed
  85a22bf

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Commits on Feb 6, 2024

• heaps: plot down to 0 on the y-axis

  

  subwaystation

  authored and

  kojix2

  committed
  fa9b1c0

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• progress in odgi pav

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  07c0822

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• fix vector size

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  d650d92

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• enable ASAN in the github workflow

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  f2cf727

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• no ASAN for now

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  9782943

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• -O option to optimize the extracted graph

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  811e969

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• -d is not mandatory anymore, 100kbp by default

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  4ca7e85

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• fix bug in reference guided sorting

  

  subwaystation

  authored and

  kojix2

  committed
  8a4c05b

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• add -n/--non-reference-paths in odgi paths

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  ca39478

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• add --non-reference-nodes

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  f480059

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• add --min-size

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  943d019

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• add --show-step-ranges to show steps of non-ref ranges

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  bc8e268

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• check there are no duplicated path ranges

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  ff4c5c9

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• fix typo

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  b57665e

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• a bit more aggressive sub path merging by default

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  938b2b7

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• manage path range boundaries

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  5571856

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• fix odgi pav seg fault

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  2e662f8

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• fix seg faul on extracted graphs

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  d5f5299

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• remove debugging code

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  142b4e7

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• fix odgi crush description

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  e5cebff

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• add nix build scripts

  

  ekg

  authored and

  kojix2

  committed
  4cc4367

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• document nix build

  

  ekg

  authored and

  kojix2

  committed
  82e0dcb

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• depth: option to use unique window depths

  

  kdm9

  authored and

  kojix2

  committed
  0682d1d

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• make svg drawing work with colors

  

  ekg

  authored and

  kojix2

  committed
  a9a0233

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• update images

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  c448498

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• emit also node length

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  9c03426

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• fix nix build pkgconfig issue

  

  ekg

  authored and

  kojix2

  committed
  245b6c6

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• deactivate 1D layout metrics in MultiQC mode

  

  subwaystation

  authored and

  kojix2

  committed
  02958e2

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• sort layout power up

  

  subwaystation

  authored and

  kojix2

  committed
  4cbc1b4

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• fix line indents

  

  subwaystation

  authored and

  kojix2

  committed
  d32b34d

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• update MultiQC tutorial

  

  subwaystation

  authored and

  kojix2

  committed
  970a1f7

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• update sort layout tutorial

  

  subwaystation

  authored and

  kojix2

  committed
  842d629

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• update sort layout tutorial

  

  subwaystation

  authored and

  kojix2

  committed
  3eb4224

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• correct copyright year

  

  subwaystation

  authored and

  kojix2

  committed
  eb96c6b

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• typo

  

  subwaystation

  authored and

  kojix2

  committed
  f4eeb5b

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• Playing around with the 1D PG-SGD parameters

  

  subwaystation

  authored and

  kojix2

  committed
  6bf8674

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• I-fell-lucky commit

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  6e7efd0

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• python requirements

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  7bbc2af

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• sphinx-rtd-theme

  

  AndreaGuarracino

  authored and

  kojix2

  committed
  5a6e834

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