TST: Add test for retaining dtype of datetime columns in DataFrame.to_hdf
#20578
Workflow file for this run
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name: Unit Tests | |
on: | |
push: | |
branches: | |
- main | |
- 2.3.x | |
pull_request: | |
branches: | |
- main | |
- 2.3.x | |
paths-ignore: | |
- "doc/**" | |
- "web/**" | |
permissions: | |
contents: read | |
defaults: | |
run: | |
shell: bash -el {0} | |
jobs: | |
ubuntu: | |
runs-on: ubuntu-22.04 | |
timeout-minutes: 90 | |
strategy: | |
matrix: | |
env_file: [actions-310.yaml, actions-311.yaml, actions-312.yaml] | |
# Prevent the include jobs from overriding other jobs | |
pattern: [""] | |
pandas_future_infer_string: ["0"] | |
include: | |
- name: "Downstream Compat" | |
env_file: actions-311-downstream_compat.yaml | |
pattern: "not slow and not network and not single_cpu" | |
pytest_target: "pandas/tests/test_downstream.py" | |
- name: "Minimum Versions" | |
env_file: actions-310-minimum_versions.yaml | |
pattern: "not slow and not network and not single_cpu" | |
- name: "Locale: it_IT" | |
env_file: actions-311.yaml | |
pattern: "not slow and not network and not single_cpu" | |
extra_apt: "language-pack-it" | |
# Use the utf8 version as the default, it has no bad side-effect. | |
lang: "it_IT.utf8" | |
lc_all: "it_IT.utf8" | |
# Also install it_IT (its encoding is ISO8859-1) but do not activate it. | |
# It will be temporarily activated during tests with locale.setlocale | |
extra_loc: "it_IT" | |
- name: "Locale: zh_CN" | |
env_file: actions-311.yaml | |
pattern: "not slow and not network and not single_cpu" | |
extra_apt: "language-pack-zh-hans" | |
# Use the utf8 version as the default, it has no bad side-effect. | |
lang: "zh_CN.utf8" | |
lc_all: "zh_CN.utf8" | |
# Also install zh_CN (its encoding is gb2312) but do not activate it. | |
# It will be temporarily activated during tests with locale.setlocale | |
extra_loc: "zh_CN" | |
- name: "Future infer strings" | |
env_file: actions-312.yaml | |
pandas_future_infer_string: "1" | |
- name: "Future infer strings (without pyarrow)" | |
env_file: actions-311.yaml | |
pandas_future_infer_string: "1" | |
- name: "Pypy" | |
env_file: actions-pypy-39.yaml | |
pattern: "not slow and not network and not single_cpu" | |
test_args: "--max-worker-restart 0" | |
- name: "Numpy Dev" | |
env_file: actions-311-numpydev.yaml | |
pattern: "not slow and not network and not single_cpu" | |
test_args: "-W error::DeprecationWarning -W error::FutureWarning" | |
- name: "Pyarrow Nightly" | |
env_file: actions-311-pyarrownightly.yaml | |
pattern: "not slow and not network and not single_cpu" | |
fail-fast: false | |
name: ${{ matrix.name || format('ubuntu-latest {0}', matrix.env_file) }} | |
env: | |
PATTERN: ${{ matrix.pattern }} | |
LANG: ${{ matrix.lang || 'C.UTF-8' }} | |
LC_ALL: ${{ matrix.lc_all || '' }} | |
PANDAS_CI: '1' | |
PANDAS_FUTURE_INFER_STRING: ${{ matrix.pandas_future_infer_string || '0' }} | |
TEST_ARGS: ${{ matrix.test_args || '' }} | |
PYTEST_WORKERS: 'auto' | |
PYTEST_TARGET: ${{ matrix.pytest_target || 'pandas' }} | |
# Clipboard tests | |
QT_QPA_PLATFORM: offscreen | |
REMOVE_PYARROW: ${{ matrix.name == 'Future infer strings (without pyarrow)' && '1' || '0' }} | |
concurrency: | |
# https://github.community/t/concurrecy-not-work-for-push/183068/7 | |
group: ${{ github.event_name == 'push' && github.run_number || github.ref }}-${{ matrix.env_file }}-${{ matrix.pattern }}-${{ matrix.extra_apt || '' }}-${{ matrix.pandas_future_infer_string }} | |
cancel-in-progress: true | |
services: | |
mysql: | |
image: mysql:8 | |
env: | |
MYSQL_ALLOW_EMPTY_PASSWORD: yes | |
MYSQL_DATABASE: pandas | |
options: >- | |
--health-cmd "mysqladmin ping" | |
--health-interval 10s | |
--health-timeout 5s | |
--health-retries 5 | |
ports: | |
- 3306:3306 | |
postgres: | |
image: postgres:16 | |
env: | |
PGUSER: postgres | |
POSTGRES_USER: postgres | |
POSTGRES_PASSWORD: postgres | |
POSTGRES_DB: pandas | |
options: >- | |
--health-cmd pg_isready | |
--health-interval 10s | |
--health-timeout 5s | |
--health-retries 5 | |
ports: | |
- 5432:5432 | |
moto: | |
image: motoserver/moto:5.0.0 | |
env: | |
AWS_ACCESS_KEY_ID: foobar_key | |
AWS_SECRET_ACCESS_KEY: foobar_secret | |
ports: | |
- 5000:5000 | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Extra installs | |
# https://pytest-qt.readthedocs.io/en/latest/troubleshooting.html#github-actions-azure-pipelines-travis-ci-and-gitlab-ci-cd | |
run: sudo apt-get update && sudo apt-get install -y libegl1 libopengl0 ${{ matrix.extra_apt || ''}} | |
- name: Generate extra locales | |
# These extra locales will be available for locale.setlocale() calls in tests | |
run: sudo locale-gen ${{ matrix.extra_loc }} | |
if: ${{ matrix.extra_loc }} | |
- name: Set up Conda | |
uses: ./.github/actions/setup-conda | |
with: | |
environment-file: ci/deps/${{ matrix.env_file }} | |
- name: Build Pandas | |
id: build | |
uses: ./.github/actions/build_pandas | |
# TODO: Re-enable once Pypy has Pypy 3.10 on conda-forge | |
if: ${{ matrix.name != 'Pypy' }} | |
- name: Test (not single_cpu) | |
uses: ./.github/actions/run-tests | |
if: ${{ matrix.name != 'Pypy' }} | |
env: | |
# Set pattern to not single_cpu if not already set | |
PATTERN: ${{ env.PATTERN == '' && 'not single_cpu' || matrix.pattern }} | |
- name: Test (single_cpu) | |
uses: ./.github/actions/run-tests | |
env: | |
PATTERN: 'single_cpu' | |
PYTEST_WORKERS: 0 | |
if: ${{ matrix.pattern == '' && (always() && steps.build.outcome == 'success')}} | |
macos-windows: | |
timeout-minutes: 90 | |
strategy: | |
matrix: | |
# Note: Don't use macOS latest since macos 14 appears to be arm64 only | |
os: [macos-13, macos-14, windows-latest] | |
env_file: [actions-310.yaml, actions-311.yaml, actions-312.yaml] | |
fail-fast: false | |
runs-on: ${{ matrix.os }} | |
name: ${{ format('{0} {1}', matrix.os, matrix.env_file) }} | |
concurrency: | |
# https://github.community/t/concurrecy-not-work-for-push/183068/7 | |
group: ${{ github.event_name == 'push' && github.run_number || github.ref }}-${{ matrix.env_file }}-${{ matrix.os }} | |
cancel-in-progress: true | |
env: | |
PANDAS_CI: 1 | |
PYTEST_TARGET: pandas | |
PATTERN: "not slow and not db and not network and not single_cpu" | |
PYTEST_WORKERS: 'auto' | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Set up Conda | |
uses: ./.github/actions/setup-conda | |
with: | |
environment-file: ci/deps/${{ matrix.env_file }} | |
- name: Build Pandas | |
uses: ./.github/actions/build_pandas | |
- name: Test | |
uses: ./.github/actions/run-tests | |
Linux-32-bit: | |
runs-on: ubuntu-22.04 | |
container: | |
image: quay.io/pypa/manylinux2014_i686 | |
options: --platform linux/386 | |
steps: | |
- name: Checkout pandas Repo | |
# actions/checkout does not work since it requires node | |
run: | | |
git config --global --add safe.directory $PWD | |
if [ $GITHUB_EVENT_NAME != pull_request ]; then | |
git clone --recursive --branch=$GITHUB_REF_NAME https://github.com/${GITHUB_REPOSITORY}.git $GITHUB_WORKSPACE | |
git reset --hard $GITHUB_SHA | |
else | |
git clone --recursive https://github.com/${GITHUB_REPOSITORY}.git $GITHUB_WORKSPACE | |
git fetch origin $GITHUB_REF:my_ref_name | |
git checkout $GITHUB_BASE_REF | |
git -c user.email="[email protected]" merge --no-commit my_ref_name | |
fi | |
- name: Build environment and Run Tests | |
# https://github.com/numpy/numpy/issues/24703#issuecomment-1722379388 | |
run: | | |
/opt/python/cp311-cp311/bin/python -m venv ~/virtualenvs/pandas-dev | |
. ~/virtualenvs/pandas-dev/bin/activate | |
python -m pip install --no-cache-dir -U pip wheel setuptools meson[ninja]==1.2.1 meson-python==0.13.1 | |
python -m pip install numpy -Csetup-args="-Dallow-noblas=true" | |
python -m pip install --no-cache-dir versioneer[toml] cython python-dateutil pytest>=7.3.2 pytest-xdist>=3.4.0 hypothesis>=6.84.0 | |
python -m pip install --no-cache-dir --no-build-isolation -e . -Csetup-args="--werror" | |
python -m pip list --no-cache-dir | |
export PANDAS_CI=1 | |
python -m pytest -m 'not slow and not network and not clipboard and not single_cpu' pandas --junitxml=test-data.xml | |
concurrency: | |
# https://github.community/t/concurrecy-not-work-for-push/183068/7 | |
group: ${{ github.event_name == 'push' && github.run_number || github.ref }}-32bit | |
cancel-in-progress: true | |
Linux-Musl: | |
runs-on: ubuntu-22.04 | |
container: | |
image: quay.io/pypa/musllinux_1_1_x86_64 | |
steps: | |
- name: Checkout pandas Repo | |
# actions/checkout does not work since it requires node | |
run: | | |
git config --global --add safe.directory $PWD | |
if [ $GITHUB_EVENT_NAME != pull_request ]; then | |
git clone --recursive --branch=$GITHUB_REF_NAME https://github.com/${GITHUB_REPOSITORY}.git $GITHUB_WORKSPACE | |
git reset --hard $GITHUB_SHA | |
else | |
git clone --recursive https://github.com/${GITHUB_REPOSITORY}.git $GITHUB_WORKSPACE | |
git fetch origin $GITHUB_REF:my_ref_name | |
git checkout $GITHUB_BASE_REF | |
git -c user.email="[email protected]" merge --no-commit my_ref_name | |
fi | |
- name: Configure System Packages | |
run: | | |
apk update | |
apk add musl-locales | |
- name: Build environment | |
run: | | |
/opt/python/cp311-cp311/bin/python -m venv ~/virtualenvs/pandas-dev | |
. ~/virtualenvs/pandas-dev/bin/activate | |
python -m pip install --no-cache-dir -U pip wheel setuptools meson-python==0.13.1 meson[ninja]==1.2.1 | |
python -m pip install --no-cache-dir versioneer[toml] cython numpy python-dateutil pytest>=7.3.2 pytest-xdist>=3.4.0 hypothesis>=6.84.0 | |
python -m pip install --no-cache-dir --no-build-isolation -e . -Csetup-args="--werror" | |
python -m pip list --no-cache-dir | |
- name: Run Tests | |
run: | | |
. ~/virtualenvs/pandas-dev/bin/activate | |
export PANDAS_CI=1 | |
python -m pytest -m 'not slow and not network and not clipboard and not single_cpu' pandas --junitxml=test-data.xml | |
concurrency: | |
# https://github.community/t/concurrecy-not-work-for-push/183068/7 | |
group: ${{ github.event_name == 'push' && github.run_number || github.ref }}-musl | |
cancel-in-progress: true | |
python-dev: | |
# This job may or may not run depending on the state of the next | |
# unreleased Python version. DO NOT DELETE IT. | |
# | |
# In general, this will remain frozen(present, but not running) until: | |
# - The next unreleased Python version has released beta 1 | |
# - This version should be available on GitHub Actions. | |
# - Our required build/runtime dependencies(numpy, Cython, python-dateutil) | |
# support that unreleased Python version. | |
# To unfreeze, comment out the ``if: false`` condition, and make sure you update | |
# the name of the workflow and Python version in actions/setup-python ``python-version:`` | |
# | |
# After it has been unfrozen, this file should remain unfrozen(present, and running) until: | |
# - The next Python version has been officially released. | |
# OR | |
# - Most/All of our optional dependencies support the next Python version AND | |
# - The next Python version has released a rc(we are guaranteed a stable ABI). | |
# To freeze this file, uncomment out the ``if: false`` condition, and migrate the jobs | |
# to the corresponding posix/windows-macos/sdist etc. workflows. | |
# Feel free to modify this comment as necessary. | |
# if: false # Uncomment this to freeze the workflow, comment it to unfreeze | |
defaults: | |
run: | |
shell: bash -eou pipefail {0} | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
# Separate out macOS 13 and 14, since macOS 14 is arm64 only | |
os: [ubuntu-22.04, macOS-13, macOS-14, windows-latest] | |
timeout-minutes: 90 | |
concurrency: | |
# https://github.community/t/concurrecy-not-work-for-push/183068/7 | |
group: ${{ github.event_name == 'push' && github.run_number || github.ref }}-${{ matrix.os }}-python-dev | |
cancel-in-progress: true | |
env: | |
PYTEST_WORKERS: "auto" | |
PANDAS_CI: 1 | |
PATTERN: "not slow and not network and not clipboard and not single_cpu" | |
PYTEST_TARGET: pandas | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Set up Python Dev Version | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.13-dev' | |
- name: Build Environment | |
run: | | |
python --version | |
python -m pip install --upgrade pip setuptools wheel meson[ninja]==1.2.1 meson-python==0.13.1 | |
python -m pip install --pre --extra-index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple numpy | |
python -m pip install versioneer[toml] | |
python -m pip install python-dateutil tzdata cython hypothesis>=6.84.0 pytest>=7.3.2 pytest-xdist>=3.4.0 pytest-cov | |
python -m pip install -ve . --no-build-isolation --no-index --no-deps -Csetup-args="--werror" | |
python -m pip list | |
- name: Run Tests | |
uses: ./.github/actions/run-tests | |
python-freethreading: | |
defaults: | |
run: | |
shell: bash -eou pipefail {0} | |
runs-on: ubuntu-22.04 | |
timeout-minutes: 90 | |
concurrency: | |
# https://github.community/t/concurrecy-not-work-for-push/183068/7 | |
group: ${{ github.event_name == 'push' && github.run_number || github.ref }}-${{ matrix.os }}-python-freethreading-dev | |
cancel-in-progress: true | |
env: | |
PYTEST_WORKERS: "auto" | |
PANDAS_CI: 1 | |
PATTERN: "not slow and not network and not clipboard and not single_cpu" | |
PYTEST_TARGET: pandas | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Set up Python Free-threading Version | |
uses: deadsnakes/[email protected] | |
with: | |
python-version: 3.13-dev | |
nogil: true | |
- name: Build Environment | |
run: | | |
python --version | |
python -m pip install --upgrade pip setuptools wheel numpy meson[ninja]==1.2.1 meson-python==0.13.1 | |
python -m pip install --pre --extra-index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple cython | |
python -m pip install versioneer[toml] | |
python -m pip install python-dateutil pytz tzdata hypothesis>=6.84.0 pytest>=7.3.2 pytest-xdist>=3.4.0 pytest-cov | |
python -m pip install -ve . --no-build-isolation --no-index --no-deps -Csetup-args="--werror" | |
python -m pip list | |
- name: Run Tests | |
uses: ./.github/actions/run-tests | |
# NOTE: this job must be kept in sync with the Pyodide build job in wheels.yml | |
emscripten: | |
# Note: the Python version, Emscripten toolchain version are determined | |
# by the Pyodide version. The appropriate versions can be found in the | |
# Pyodide repodata.json "info" field, or in the Makefile.envs file: | |
# https://github.com/pyodide/pyodide/blob/stable/Makefile.envs#L2 | |
# The Node.js version can be determined via Pyodide: | |
# https://pyodide.org/en/stable/usage/index.html#node-js | |
name: Pyodide build | |
runs-on: ubuntu-22.04 | |
concurrency: | |
# https://github.community/t/concurrecy-not-work-for-push/183068/7 | |
group: ${{ github.event_name == 'push' && github.run_number || github.ref }}-wasm | |
cancel-in-progress: true | |
steps: | |
- name: Checkout pandas Repo | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Set up Python for Pyodide | |
id: setup-python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.11.3' | |
- name: Set up Emscripten toolchain | |
uses: mymindstorm/setup-emsdk@v14 | |
with: | |
version: '3.1.46' | |
actions-cache-folder: emsdk-cache | |
- name: Install pyodide-build | |
run: pip install "pyodide-build==0.25.1" | |
- name: Build pandas for Pyodide | |
run: | | |
pyodide build | |
- name: Set up Node.js | |
uses: actions/setup-node@v4 | |
with: | |
node-version: '18' | |
- name: Set up Pyodide virtual environment | |
run: | | |
pyodide venv .venv-pyodide | |
source .venv-pyodide/bin/activate | |
pip install dist/*.whl | |
- name: Test pandas for Pyodide | |
env: | |
PANDAS_CI: 1 | |
run: | | |
source .venv-pyodide/bin/activate | |
pip install pytest hypothesis | |
# do not import pandas from the checked out repo | |
cd .. | |
python -c 'import pandas as pd; pd.test(extra_args=["-m not clipboard and not single_cpu and not slow and not network and not db"])' |