merge #115

	# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
	# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
	on:
	push:
	branches: [documentation]
	release:
	types: [published]
	workflow_dispatch:

	name: pkgdown

	jobs:
	pkgdown:
	runs-on: macos-13
	# Only restrict concurrency for non-PR jobs
	concurrency:
	group: pkgdown-${{ github.event_name != 'pull_request' \|\| github.run_id }}
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	steps:
	- uses: actions/checkout@v4

	- uses: r-lib/actions/setup-pandoc@v2

	- name: Setup R and Bioconductor
	uses: grimbough/bioc-actions/setup-bioc@v1
	with:
	bioc-version: release
	- uses: r-lib/actions/setup-r-dependencies@v2
	with:
	extra-packages: any::pkgdown, local::.
	needs: website
	- name: Install irlba from source
	run: install.packages("irlba", type = "source")
	shell: Rscript {0}
	- name: Setup python
	uses: actions/setup-python@v4
	with:
	python-version: '3.10'
	- uses: actions/cache@v2
	name: Configure pip caching
	with:
	path: ~/.cache/pip
	key: ${{ runner.os }}-pip-${{ hashFiles('**/vig2ipynb_requirements.txt') }}
	restore-keys: \|
	${{ runner.os }}-pip-
	- name: Install gget
	run: \|
	python -m pip install gget
	- name: Build site
	run: pkgdown::build_site_github_pages(new_process = TRUE, install = FALSE)
	shell: Rscript {0}

	- name: Deploy to GitHub pages 🚀
	if: github.event_name != 'pull_request'
	uses: JamesIves/[email protected]
	with:
	clean: false
	branch: gh-pages
	folder: docs

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