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Update syllabus.md
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owensgl authored Sep 22, 2023
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Expand Up @@ -92,10 +92,11 @@ ideas on how to plan future genomic projects.

Students completing this course will be able to:

* Navigate on unix commandline.
* Navigate on unix command line.
* Use R for data wrangling and plotting.
* Understand how genomic data is generated.
* Run commandline genomic programs.
* Run command line bioinformatic programs.
* Explain the principles behind genome assembly and variant detection.
* Turn sequence data into genetic variation.
* Run basic population genetic analyses.
* Explain how and why genomic data is generated.
Expand Down Expand Up @@ -152,6 +153,10 @@ if you fall behind. Reasonable requests for longer extensions will also be grant
Assignments turned in after the 24 hour grace period without an extension will be
be graded with a 20% penalty.

Additionally, for pre-lecture questions, student grades will be based on their best
10 out of 11 assigments. This allows students to not hand in 1 assignment without grade
penalty.


### Assignment policy

Expand All @@ -163,14 +168,14 @@ the lab material.

| Item | Percentage |
| -------- | ------- |
| Pre-lecture questions (11) | 22% |
| Pre-lecture questions (10) | 20% |
| In lab assignments (9) | 27% |
| Midterm 1 | 15% |
| Midterm 2 | 15% |
| Final Group Project | 21% |
| Mid term Exam 1 | 15% |
| Late term Exam 2 | 15% |
| Final Group Project | 23% |

**To pass the course**, students must:
1) Complete midterm 1 and midterm 2
1) Complete exams 1 and 2
2) Attend the lab section for at least 11 out of 13 weeks.
3) Complete the final group project.
4) Score a final grade of 50.0 points for the entire course.
Expand All @@ -193,6 +198,19 @@ complexity.

There are no materials and supplies fees for this course.

## Graduate Students
Graduate students taking Computational Genomics as a directed studies course have several differences from undergraduate students.
1) Graduate students will not take the exams.
2) Graduate students will work independently instead of groups on the final project.
3) Each graduate student final project will include additional requirements.
4) Graduate students will present a lecture on a topic relevant to the class.

| Item | Percentage |
| -------- | ------- |
| Pre-lecture questions (10) | 20% |
| In lab assignments (9) | 27% |
| Lecture | 30% |
| Final Solo Project | 23% |

## UVic Policies

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