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Add CI job against GAP master #995

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merged 18 commits into from
May 31, 2024
Merged

Add CI job against GAP master #995

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9b7bec4
Add CI job against GAP master
lgoettgens May 22, 2024
8e25c7a
fix
lgoettgens May 22, 2024
be70ccb
more
lgoettgens May 22, 2024
8aef207
moore
lgoettgens May 22, 2024
7c95b1d
try GAP 4.13
lgoettgens May 22, 2024
8d484ab
Address comments
lgoettgens May 25, 2024
2b0fdfc
Full matrix
lgoettgens May 25, 2024
84a46d6
Add macos deps
lgoettgens May 25, 2024
2a85cbe
changes
lgoettgens May 25, 2024
d3b566a
try to work around some nightly issue
lgoettgens May 25, 2024
c5d751c
Remove `touch`
lgoettgens May 27, 2024
fad961c
Add fix for macOS
lgoettgens May 27, 2024
db25a37
Update src/setup.jl
lgoettgens May 27, 2024
c6b3314
Update src/setup.jl
lgoettgens May 27, 2024
4c85966
Update .github/workflows/gap.yml
lgoettgens May 27, 2024
5a3b2bc
Reduce number of jobs
lgoettgens May 28, 2024
d61e12a
fix
lgoettgens May 28, 2024
f9756a4
Update etc/run_with_override.jl
fingolfin May 31, 2024
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74 changes: 74 additions & 0 deletions .github/workflows/gap.yml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,74 @@
name: CI with GAP

on:
push:
branches:
- 'master'
- 'release-*'
tags: '*'
pull_request:

concurrency:
# group by workflow and ref; the last slightly strange component ensures that for pull
# requests, we limit to 1 concurrent job, but for the default repository branch we don't
group: ${{ github.workflow }}-${{ github.ref }}-${{ github.ref_name != github.event.repository.default_branch || github.run_number }}
# Cancel intermediate builds, but only if it is a pull request build.
cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}

jobs:
test:
name: Julia ${{ matrix.julia-version }} - GAP ${{ matrix.gap-version }} - ${{ matrix.os }}
runs-on: ${{ matrix.os }}
timeout-minutes: 20
continue-on-error: ${{ matrix.julia-version == 'nightly' }}
strategy:
fail-fast: false
matrix:
gap-version:
- 'master'
- 'stable-4.13'
julia-version:
- '1.6'
- '1' # latest stable release
- 'nightly'
os:
- ubuntu-latest
include:
# Add a few macOS jobs (the number we can run in parallel is limited)
- gap-version: 'master'
julia-version: '1'
os: macOS-latest
- gap-version: 'stable-4.13'
julia-version: '1'
os: macOS-latest

steps:
- uses: actions/checkout@v4
- name: "Set up Julia"
uses: julia-actions/setup-julia@v2
with:
version: ${{ matrix.julia-version }}
- name: Checkout GAP
uses: actions/checkout@v4
with:
repository: 'gap-system/gap'
ref: ${{ matrix.gap-version }}
path: 'GAPROOT'
- name: "Install dependencies (for macOS)"
if: runner.os == 'macOS'
run: |
brew install autoconf zlib # gmp pkg-config
- name: "Build GAP"
run: |
mv GAPROOT /tmp/GAPROOT
cd /tmp/GAPROOT
./autogen.sh
./configure
make -j`nproc`
- name: "Override bundled GAP"
run: |
julia --proj=override etc/setup_override_dir.jl /tmp/GAPROOT /tmp/gap_jll_override
- name: "Run tests"
run: |
julia --proj=override etc/run_with_override.jl /tmp/gap_jll_override --depwarn=error -e "using Pkg; Pkg.test(\"GAP\")"

20 changes: 13 additions & 7 deletions etc/run_with_override.jl
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Expand Up @@ -12,21 +12,24 @@ gapoverride = abspath(gapoverride)
#
@info "Install needed packages"
using Pkg
Pkg.add(["GAP_jll"])
Pkg.add(["GAP_lib_jll"])
Pkg.develop(path=dirname(dirname(@__FILE__)))
Pkg.add(["GAP_jll", "GAP_lib_jll"])
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This changed order of additions makes a little bit faster to precompile

Pkg.instantiate()

import GAP_lib_jll

#
#
#
function add_jll_override(depot, pkgname, newdir)
function add_jll_override(depot, pkgname, pkguuid, newdir)
pkgid = Base.identify_package("$(pkgname)_jll")
uuid = string(pkgid.uuid)
# does not work with julia 1.12-dev, see https://github.com/JuliaLang/julia/issues/54599
# TODO: remove pkguuid argument again once that bug is fixed
# pkguuid = string(pkgid.uuid)
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This threw some (seemingly random) segfaults with nightly. But only if running from the console, not if copying everything to the reply.
Thus I took the easy solution and added the UUID to the arguments instead

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Just tried with Julia master and when running this code I actually got

ERROR: LoadError: type Nothing has no field uuid

which would suggest pkgid === nothing, but then also the touch below would be borked?

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if you print the pkgid, this succeeds (and prints something non-trivial), but i then get a segfault instead of a LoadError when accessing pkgid.uuid

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Indeed: printing the pkgid makes it proceed -- that seems like a big regression in Julia, printing a value shouldn't change it form nothing to something, should it? In particular since this works in the REPL (without printing):

pkgid = Base.identify_package("GAP_jll"); pkgid.uuid

Perhaps we should open an issue?

Anyway, so I inserted the print and it proceeds, but I don't get a crash, I get this:

[ Info: Created temporary depot at /var/folders/d_/1zss2fnd6xdgclqnj8jj_27m0000gp/T/jl_7ABU3q
pkgname GAP has pkgid Base.PkgId(Base.UUID("5cd7a574-2c56-5be2-91dc-c8bc375b9ddf"), "GAP_jll")
pkgname GAP_lib has pkgid Base.PkgId(Base.UUID("de1ad85e-c930-5cd4-919d-ccd3fcafd1a3"), "GAP_lib_jll")
Precompiling GAP...
Info Given GAP was explicitly requested, output will be shown live
ERROR: LoadError: ArgumentError: Package GAP_jll [5cd7a574-2c56-5be2-91dc-c8bc375b9ddf] is required but does not seem to be installed:
 - Run `Pkg.instantiate()` to install all recorded dependencies.

which makes no sense, as we run Pkg.instantiate(). But I've inserted another Pkg.instantiate() invocation right after the add_jll_override calls.

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Thanks for reporting it upstream, it seems we've hit an IMHO rather serious looking code generation bug in Julia.

For now we can keep this workaround, but let's remove it again when they fix their bug.

mkpath(joinpath(depot, "artifacts"))
open(joinpath(depot, "artifacts", "Overrides.toml"), "a") do f
write(f, """
[$(uuid)]
[$(pkguuid)]
$(pkgname) = "$(newdir)"
""")
end
Expand All @@ -40,8 +43,11 @@ tmpdepot = mktempdir(; cleanup=true)
@info "Created temporary depot at $(tmpdepot)"

# create override file for GAP_jll
add_jll_override(tmpdepot, "GAP", gapoverride)
add_jll_override(tmpdepot, "GAP_lib", gapoverride)
add_jll_override(tmpdepot, "GAP", "5cd7a574-2c56-5be2-91dc-c8bc375b9ddf", gapoverride)
add_jll_override(tmpdepot, "GAP_lib", "de1ad85e-c930-5cd4-919d-ccd3fcafd1a3", gapoverride)

# HACK: use the documentation from GAP_lib_jll instead of rebuilding it
run(`ln -sf $(abspath(GAP_lib_jll.find_artifact_dir(), "share", "gap", "doc")) $(abspath(gapoverride, "share", "gap", "doc"))`)
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# prepend our temporary depot to the depot list...
withenv("JULIA_DEPOT_PATH"=>tmpdepot*":", "FORCE_JULIAINTERFACE_COMPILATION" => "true") do
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2 changes: 1 addition & 1 deletion etc/setup_override_dir.jl
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Expand Up @@ -50,7 +50,7 @@ function gmp_artifact_dir()
hash = Base.SHA1(meta["git-tree-sha1"])
if !artifact_exists(hash)
dl_info = first(meta["download"])
download_artifact(hash, dl_info["url"], dl_info["sha256"])
Pkg.Artifacts.download_artifact(hash, dl_info["url"], dl_info["sha256"])
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end
return artifact_path(hash)
end
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1 change: 1 addition & 0 deletions src/setup.jl
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Expand Up @@ -118,6 +118,7 @@ function regenerate_gaproot()
# add the necessary flags to link against libgap
gap_lib = joinpath(gap_prefix, "lib")
sysinfo["GAP_LDFLAGS"] = "-L$(gap_lib) -lgap"
Sys.isapple() && (sysinfo["GAC_LDFLAGS"] = " -bundle") # Remove this line once the GAP_jll build recipe is fixed

GAP_VERSION = VersionNumber(sysinfo["GAP_VERSION"])
gaproot_packages = joinpath(Base.DEPOT_PATH[1], "gaproot", "v$(GAP_VERSION.major).$(GAP_VERSION.minor)")
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