Skip to content
Change the repository type filter

All

    Repositories list

    • A Frontend Framework for Gen3 data portals
      TypeScript
      Apache License 2.0
      42015Updated Dec 5, 2024Dec 5, 2024
    • Manifests tracking service versions to release to each environment
      HTML
      Apache License 2.0
      780185Updated Dec 5, 2024Dec 5, 2024
    • Python
      Apache License 2.0
      00024Updated Dec 4, 2024Dec 4, 2024
    • pelican

      Public
      Sower jobs for PFB export & import
      Python
      Apache License 2.0
      4308Updated Dec 4, 2024Dec 4, 2024
    • Windmill: data portal for metadata submission and query
      JavaScript
      Apache License 2.0
      44294320Updated Dec 4, 2024Dec 4, 2024
    • Automation for standing up Gen3 commons
      Shell
      Apache License 2.0
      67419980Updated Dec 4, 2024Dec 4, 2024
    • indexd

      Public
      Index service server
      Python
      Apache License 2.0
      20212419Updated Dec 4, 2024Dec 4, 2024
    • gen3-helm

      Public
      Helm charts for Gen3 Deployments
      Smarty
      Apache License 2.0
      239513Updated Dec 4, 2024Dec 4, 2024
    • HCL
      Apache License 2.0
      0105Updated Dec 4, 2024Dec 4, 2024
    • python wrapper and metaschema for datadictionary
      Python
      Apache License 2.0
      7449Updated Dec 4, 2024Dec 4, 2024
    • Gen3 Testing
      Python
      Apache License 2.0
      2104Updated Dec 4, 2024Dec 4, 2024
    • Repos to store CDIS Google dataflow templates
      Python
      Apache License 2.0
      00070Updated Dec 4, 2024Dec 4, 2024
    • gen3.org

      Public
      The website for gen3.org
      HTML
      Apache License 2.0
      1212014Updated Dec 4, 2024Dec 4, 2024
    • Middleware to work with Atlas cohorts in Gen3
      Go
      Apache License 2.0
      1008Updated Dec 4, 2024Dec 4, 2024
    • Gen3 SDK for Python
      Python
      Apache License 2.0
      2312320Updated Dec 3, 2024Dec 3, 2024
    • TypeScript
      Apache License 2.0
      0005Updated Dec 3, 2024Dec 3, 2024
    • Python
      Apache License 2.0
      65026Updated Dec 3, 2024Dec 3, 2024
    • gitops-qa

      Public
      HTML
      Apache License 2.0
      720169Updated Dec 3, 2024Dec 3, 2024
    • arborist

      Public
      Gen3 policy engine
      Go
      Apache License 2.0
      161569Updated Dec 3, 2024Dec 3, 2024
    • guppy

      Public
      Server that supports GraphQL queries on data from Elasticsearch
      JavaScript
      Apache License 2.0
      117114Updated Dec 3, 2024Dec 3, 2024
    • gen3-qa

      Public
      Integration Tests for Gen3
      JavaScript
      Apache License 2.0
      46216Updated Dec 3, 2024Dec 3, 2024
    • hatchery

      Public
      Go
      Apache License 2.0
      47010Updated Dec 3, 2024Dec 3, 2024
    • Data dictionary to collect GTEx dataset
      Python
      Apache License 2.0
      2204Updated Dec 3, 2024Dec 3, 2024
    • fence

      Public
      AuthN/AuthZ OIDC Service
      Python
      Apache License 2.0
      4838372Updated Dec 3, 2024Dec 3, 2024
    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      Apache License 2.0
      138007Updated Dec 3, 2024Dec 3, 2024
    • Viewers

      Public
      OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
      TypeScript
      MIT License
      3.4k1040Updated Dec 3, 2024Dec 3, 2024
    • requestor

      Public
      API to manage access requests
      Python
      Apache License 2.0
      0403Updated Dec 2, 2024Dec 2, 2024
    • The Metadata Service provides API for retrieving JSON metadata of GUIDs.
      Python
      Apache License 2.0
      101517Updated Dec 2, 2024Dec 2, 2024
    • Gen3 Discovery AI
      Python
      Apache License 2.0
      01014Updated Dec 2, 2024Dec 2, 2024
    • Gen3.2 web portal for caninedc.org
      Jupyter Notebook
      Apache License 2.0
      0002Updated Dec 1, 2024Dec 1, 2024