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    106 repositories

    • robotlab

      Public
      Cell painting and imaging with robots
      Python
      •
      MIT License
      •1•11•4•0•Updated Jan 10, 2025Jan 10, 2025

    • sc_celldeath

      Public
      Analysis scripts for single-cell celldeath publication
      Jupyter Notebook
      •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

    • imagedb

      Public
      Image database for pharmbio microscope images
      JavaScript
      •1•5•9•3•Updated Jan 9, 2025Jan 9, 2025

    • squid

      Public
      C
      •38•1•6•0•Updated Jan 7, 2025Jan 7, 2025

    • ConformalPrediction_Sofia

      Public
      0•0•0•0•Updated Dec 21, 2024Dec 21, 2024

    • ptp

      Public
      JavaScript
      •1•0•2•0•Updated Dec 19, 2024Dec 19, 2024

    • plaid

      Public
      PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Design problem.
      artificial-intelligenceconstraint-programmingplaidexperimental-designmicroplate-designmultiplate-layout-design
      Jupyter Notebook
      •4•13•0•0•Updated Dec 17, 2024Dec 17, 2024

    • cp_pipeline

      Public
      Python
      •0•0•0•0•Updated Dec 15, 2024Dec 15, 2024

    • sciluigi

      Public
      A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and modular
      workflowworkflow-enginescientific-workflowsluigi
      Python
      •
      MIT License
      •57•334•21•3•Updated Dec 10, 2024Dec 10, 2024

    • pharmbio-web

      Public
      The Static (Hugo) website for pharmb.io
      JavaScript
      •8•3•0•4•Updated Dec 5, 2024Dec 5, 2024

    • pharmbio-notebook

      Public
      Docker containers for interactive notebook environments for rancher cluster
      Dockerfile
      •1•2•0•1•Updated Oct 15, 2024Oct 15, 2024

    • kubeflow-pipelines

      Public
      Python
      •1•3•0•1•Updated Aug 2, 2024Aug 2, 2024

    • big-data_deeplearning

      Public
      Big data course, Deep learning repo
      Jupyter Notebook
      •0•2•0•0•Updated Jul 5, 2024Jul 5, 2024

    • pipelinegui

      Public
      JavaScript
      •0•0•1•0•Updated Jun 14, 2024Jun 14, 2024

    • Assignment_3a_LeukemiaCells

      Public
      Easier paths leukemia cells BDLS Assignment 3.a
      0•0•0•0•Updated Jun 10, 2024Jun 10, 2024

    • SegMine

      Public
      Playground for Segmentation and Data-mining
      MIT License
      •1•0•0•0•Updated May 8, 2024May 8, 2024

    • rstudio-docker

      Public
      Dockerfile for rstudio server with python support
      Dockerfile
      •0•0•0•0•Updated May 1, 2024May 1, 2024

    • big-data_course

      Public
      Material for the Big Data in life science course
      TeX
      •3•2•0•0•Updated Apr 16, 2024Apr 16, 2024

    • nw-cp

      Public
      A master thesis on using Graph Neural Networks and Network Analysis approach in morphological profiling of chemical perturbated cells
      HTML
      •
      MIT License
      •0•1•0•0•Updated Apr 4, 2024Apr 4, 2024

    • conformal-eval

      Public
      Refactored version of the Plot_utils library, for generating a single installable distribution
      Python
      •
      MIT License
      •2•2•0•0•Updated Apr 3, 2024Apr 3, 2024

    • SC_analysis_Benjamin

      Public
      Main analysis scripts of sc master thesis
      Jupyter Notebook
      •0•0•0•0•Updated Mar 29, 2024Mar 29, 2024

    • DeepProfiler_Benjamin

      Public
      DeepProfiler analysis scripts for RH30, Specs3k datasets
      Jupyter Notebook
      •0•0•0•0•Updated Mar 23, 2024Mar 23, 2024

    • cppipeline2

      Public
      version 2 of cppipeline
      Python
      •0•0•0•0•Updated Mar 13, 2024Mar 13, 2024

    • cplogd-v2.0

      Public
      cpLodD version 2.0 - using ChEMBL v33
      Jupyter Notebook
      •0•2•0•0•Updated Feb 5, 2024Feb 5, 2024

    • plot_utils

      Public
      Repo that groups utility functions for e.g. plotting of Conformal prediction metrics
      Jupyter Notebook
      •2•16•0•0•Updated Feb 2, 2024Feb 2, 2024

    • pharmbio_package

      Public
      A Python package automating routine pharmaceutical bioinformatics laboratory analyses and quality control checks.
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 24, 2024Jan 24, 2024

    • dorna-lab-automation

      Public
      Server and WebGUI for Dorna control, built for the Laboratory Automation in Life Sciences course.
      JavaScript
      •0•0•0•0•Updated Oct 16, 2023Oct 16, 2023

    • labdesign

      Public
      Software for design of (robot)-lab experiments
      JavaScript
      •0•0•0•1•Updated Aug 14, 2023Aug 14, 2023

    • pharmbio_LaTeX_templates

      Public
      A series of LaTeX templates used by us
      TeX
      •0•0•0•0•Updated Jul 7, 2023Jul 7, 2023

    • Nima_Msc_Presentation

      Public
      Nima's Master thesis final presentation on Intersecting Graph Representation Learning and Cell Profiling.
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jul 4, 2023Jul 4, 2023