Repositories list

• circe-be

  Public
  CIRCE is a cohort definition and syntax compiler tool for OMOP CDMv5

  Java

  •

  Apache License 2.0

  •13•0•0•2•Updated Dec 9, 2024Dec 9, 2024

• WebAPI

  Public
  OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

  Java

  •

  Apache License 2.0

  •168•0•0•2•Updated Nov 22, 2024Nov 22, 2024

• AtlasTests

  Public
  Gherkin

  •5•1•8•7•Updated Nov 7, 2024Nov 7, 2024

• AtlasShinyExport

  Public
  Apache License 2.0

  •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

• guided-llm-modeling

  Public
  Python

  •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

• FeatureExtraction

  Public
  An R package for generating features (covariates) for a cohort using data in the Common Data Model.

  R

  •60•0•0•0•Updated Aug 28, 2024Aug 28, 2024

• Atlas

  Public
  ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

  JavaScript

  •

  Apache License 2.0

  •139•0•0•1•Updated Aug 7, 2024Aug 7, 2024

• SqlRender

  Public
  This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.

  R

  •

  Other

  •77•0•0•1•Updated Aug 1, 2024Aug 1, 2024

• Achilles

  Public
  Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database

  R

  •121•2•0•0•Updated Apr 17, 2024Apr 17, 2024

• CohortGeneratorModule

  Public
  [Under development] A module wrapper around the CohortGenerator package

  R

  •8•0•0•0•Updated Jul 8, 2023Jul 8, 2023

• CohortMethodModule

  Public
  [Under development] A module wrapper around the CohortMethod package

  R

  •2•0•0•0•Updated Jul 8, 2023Jul 8, 2023

• CharacterizationModule

  Public
  A strategus module for characterization studies

  R

  •2•0•0•0•Updated Jul 7, 2023Jul 7, 2023

• Strategus

  Public
  [Under development] An R packages for coordinating and executing analytics using HADES modules

  R

  •11•0•0•0•Updated Jul 7, 2023Jul 7, 2023

• DockerEnv

  Public
  R

  •3•2•0•3•Updated Jun 9, 2023Jun 9, 2023

• PatientLevelPredictionModule

  Public
  [Under development] A module wrapper around the PatientLevelPrediction package

  R

  •4•0•0•0•Updated Apr 5, 2023Apr 5, 2023

• SelfControlledCaseSeriesModule

  Public
  [Under development] A module wrapper around the SelfControlledCaseSeries package

  R

  •4•0•0•0•Updated Mar 15, 2023Mar 15, 2023

• DatabaseConnector

  Public
  An R package for connecting to databases using JDBC.

  R

  •83•0•0•0•Updated Mar 10, 2023Mar 10, 2023

• CommonDataModel

  Public
  Definition and DDLs for the OMOP Common Data Model (CDM)

  PLpgSQL

  •

  Apache License 2.0

  •456•1•0•0•Updated Feb 9, 2023Feb 9, 2023

• CdmInspection

  Public
  R Package to support quality control inspection of an OMOP-CDM instance

  R

  •

  Apache License 2.0

  •16•0•0•0•Updated Jan 16, 2023Jan 16, 2023

• GisService

  Public
  Java

  •0•0•0•4•Updated Jan 4, 2023Jan 4, 2023

• WebPlatform

  Public
  Java

  •0•0•0•4•Updated Jan 2, 2023Jan 2, 2023

• DatabaseConnectorJars

  Public
  An R package containing the external JAR dependencies of the DatabaseConnector package.

  R

  •10•0•0•0•Updated Sep 8, 2022Sep 8, 2022

• CodeExamples

  Public
  Code Examples

  Java

  •

  Apache License 2.0

  •0•0•0•2•Updated May 20, 2022May 20, 2022

• OncologyRegimenFinder

  Public
  0•0•0•0•Updated Apr 23, 2022Apr 23, 2022

• SkeletonPredictionStudy

  Public
  A skeleton package to use as a template for studies developing prediction models

  R

  •9•0•0•0•Updated Apr 1, 2021Apr 1, 2021

• SkeletonComparativeEffectStudy

  Public
  An R package that can be used as the starting point to implement a comparative effectiveness study.

  R

  •16•0•0•0•Updated Jan 26, 2021Jan 26, 2021

• MethodEvaluation

  Public
  An R package for the evaluation of estimation methods

  R

  •5•0•0•1•Updated Dec 3, 2020Dec 3, 2020

• IncidenceRates

  Public
  R

  •1•0•0•1•Updated Nov 30, 2020Nov 30, 2020

• Hydra

  Public
  An R package and Java library for hydrating package skeletons into executable R study packages based on specifications in JSON format.

  Java

  •7•0•0•0•Updated Jul 21, 2020Jul 21, 2020

• sandbox

  Public
  Place for initial sharing of community-contributed code

  PLpgSQL

  •5•0•0•0•Updated Jun 11, 2020Jun 11, 2020