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    78 repositories

    • neuro-forge

      Public
      Provisioning of neuroimaging workspace for image processing and data analysis
      Python
      •0•1•4•2•Updated Nov 29, 2024Nov 29, 2024

    • gaia

      Public
      The GAIA website
      TeX
      •4•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • baobab

      Public
      The BAOBAB website.
      SCSS
      •
      Other
      •0•0•1•0•Updated Nov 23, 2024Nov 23, 2024

    • deep_folding

      Public
      Jupyter Notebook
      •
      Other
      •3•7•2•2•Updated Nov 18, 2024Nov 18, 2024

    • ROILoc

      Public
      Python script based on ANTs to locate (center & crop) any region given in the CerebrA atlas, while keeping the MRI in its native space.
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • HSF

      Public
      Hippocampal Segmentation Factory (HSF). A one-liner Deep Learning tool to segment raw T2w (and T1w) MRIs into hippocampal subfields in few seconds. Trained on 700+ manually segmented hippocampi.
      Python
      •4•0•1•0•Updated Nov 15, 2024Nov 15, 2024

    • highres-cortex

      Public
      Analysis tools for sub-millimetre MRI of the cerebral cortex
      neuroimagingcortexbrainvisac-plus-plus
      C++
      •8•14•0•1•Updated Nov 13, 2024Nov 13, 2024

    • ciel

      Public
      The CIEL website
      TeX
      •1•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • neurospin.github.io

      Public
      The NeuroSpin minimal experimental website
      CSS
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • pycaravel

      Public
      This module has been created to simplify the search of datasets in a BIDS directory or a CubicWeb instance.
      Python
      •
      Other
      •3•0•1•1•Updated Sep 20, 2024Sep 20, 2024

    • pymultifracs

      Public
      Wavelet based multifractal analysis of 1D signals
      Jupyter Notebook
      •
      MIT License
      •13•30•0•1•Updated May 28, 2024May 28, 2024

    • neurospin_to_bids

      Public
      Tool for exporting imaging data from the NeuroSpin archive in BIDS format
      Python
      •
      Other
      •1•6•4•0•Updated May 14, 2024May 14, 2024

    • scripts

      Public
      Sharing and versioning processing scripts of studies
      Python
      •1•4•0•0•Updated Feb 13, 2024Feb 13, 2024

    • pylearn-mulm

      Public
      Massive univariate linear model
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•5•0•0•Updated Feb 13, 2024Feb 13, 2024

    • hsf_train

      Public
      Training code for the Hippocampal Segmentation Factory
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 11, 2024Feb 11, 2024

    • Gondova_2023

      Public
      Code for Gondova et al., 2022 (Neuroimage: Reports)
      Jupyter Notebook
      •1•0•0•0•Updated Jan 26, 2024Jan 26, 2024

    • Neumane_2022

      Public
      Code for Neumane et al., 2022 (Frontiers in Human Neuroscience)
      Jupyter Notebook
      •1•0•0•0•Updated Jan 26, 2024Jan 26, 2024

    • colorado

      Public
      interactive 3D plots in juptrer notebooks
      Python
      •
      MIT License
      •1•2•0•0•Updated Nov 30, 2023Nov 30, 2023

    • dico_toolbox

      Public
      a pythonic toolbox for Brainvisa entities
      Python
      •1•0•0•0•Updated Sep 29, 2023Sep 29, 2023

    • pypreprocess

      Public
      Preprocessing scripts for neuro imaging
      Python
      •66•106•45•13•Updated Sep 28, 2023Sep 28, 2023

    • point-cloud-pattern-mining

      Public
      point-clouds manipulation
      Python
      •3•2•0•0•Updated Jul 10, 2023Jul 10, 2023

    • netSGCCA

      Public
      netSGCCA in Python
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated May 22, 2023May 22, 2023

    • CC-parcellation-from-tractography

      Public
      Parcellation of the mid-sagittal section of the corpus callosum based on bilateral homotopic connectivity
      Shell
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated May 17, 2023May 17, 2023

    • pylearn-parsimony

      Public
      Structured Machine Learning in Python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •16•45•18•3•Updated Apr 14, 2023Apr 14, 2023

    • fMRI_workshop

      Public
      Material for fMRI training that takes place at Neurospin
      Jupyter Notebook
      •3•11•1•0•Updated Mar 9, 2023Mar 9, 2023

    • pyRGCCA

      Public
      Python implementations for RGCCA
      MIT License
      •0•0•0•0•Updated Feb 8, 2023Feb 8, 2023

    • caps-clindmri

      Public
      Clinical dMRI
      Python
      •
      Other
      •4•0•0•3•Updated May 19, 2022May 19, 2022

    • c_unet

      Public
      Pytorch implementation of a G-CNN with a U-Net architecture, using discrete 3D roto-translational equivariant convolutions, to segment the hippocampal subfields on 3D MRIs.
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 27, 2021Sep 27, 2021

    • brainomics2

      Public archive
      Business logic for population imaging
      Python
      •4•0•0•2•Updated Aug 9, 2021Aug 9, 2021

    • nitk

      Public
      Neuroimaging Toolkit
      Python
      •2•2•0•1•Updated Jul 8, 2021Jul 8, 2021