Repositories list

• MMS-SD_workshop

  Public
  This repository holds all of the code for the Malaria Molecular Surveillance Study Design (MMS-SD) 2024 workshop held in New Orleans, USA

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

• hipercow

  Public
  🐮💻🐮

  R

  •

  Other

  •0•1•0•3•Updated Nov 26, 2024Nov 26, 2024

• dust2

  Public
  R

  •

  Other

  •0•0•0•3•Updated Nov 26, 2024Nov 26, 2024

• vimcmalaria

  Public
  helper functions for VIMC malaria workflow

  R

  •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

• odin2

  Public
  R

  •

  Other

  •0•3•0•1•Updated Nov 26, 2024Nov 26, 2024

• odin-monty

  Public
  R

  •0•0•2•2•Updated Nov 26, 2024Nov 26, 2024

• packit

  Public
  Web app for serving outpack and/or orderly2 metadata

  TypeScript

  •

  MIT License

  •1•1•1•2•Updated Nov 25, 2024Nov 25, 2024

• arbomap

  Public
  Web application displaying dengue indicators

  TypeScript

  •

  MIT License

  •0•0•0•2•Updated Nov 25, 2024Nov 25, 2024

• mpoxRingVax

  Public
  R

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Nov 25, 2024Nov 25, 2024

• grout

  Public
  Geo tile server

  0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• YellowFeverDynamics

  Public
  C++

  •

  MIT License

  •0•1•0•0•Updated Nov 22, 2024Nov 22, 2024

• YEP

  Public
  A package for running a dynamic SEIRV model of yellow fever and inferring model parameters

  R

  •

  MIT License

  •1•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• lostturnip

  Public
  Find your lost roots

  C++

  •

  Other

  •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• didehpc

  Public
  ☁️💻☁️ Support for the DIDE cluster

  infrastructurecluster

  R

  •

  Other

  •4•10•0•0•Updated Nov 22, 2024Nov 22, 2024

• weave

  Public
  R

  •

  Other

  •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• outpack_server

  Public
  Rust server for outpack

  Rust

  •

  Other

  •1•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• monty

  Public
  R

  •

  Other

  •0•3•1•3•Updated Nov 22, 2024Nov 22, 2024

• naomi

  Public
  Naomi model for subnational HIV estimation

  R

  •

  Other

  •9•9•39•5•Updated Nov 22, 2024Nov 22, 2024

• noticeboard

  Public
  DIDE noticeboard website

  HTML

  •3•0•0•1•Updated Nov 22, 2024Nov 22, 2024

• covid19-forecasts-orderly

  Public
  R

  •10•29•3•0•Updated Nov 22, 2024Nov 22, 2024

• malariasimulation

  Public
  The malaria model

  R

  •

  Other

  •14•16•38•5•Updated Nov 21, 2024Nov 21, 2024

• site

  Public
  🌎 malaria 🌍 site 🌏

  R

  •

  Other

  •2•0•5•0•Updated Nov 20, 2024Nov 20, 2024

• eppasm

  Public
  EPP Age/Sex Model (EPP-ASM)

  R

  •11•6•8•7•Updated Nov 19, 2024Nov 19, 2024

• EPIONCHO.IBM

  Public
  EPIONCHO-IBM is an individual-based dynamic transmission model for onchocerciasis.

  R

  •

  Other

  •5•0•0•0•Updated Nov 19, 2024Nov 19, 2024

• orderly2

  Public
  R

  •

  Other

  •2•8•10•1•Updated Nov 19, 2024Nov 19, 2024

• cowflu

  Public
  🐮🛃

  R

  •

  Other

  •0•0•0•0•Updated Nov 19, 2024Nov 19, 2024

• first90release

  Public
  R

  •

  Other

  •1•5•4•0•Updated Nov 19, 2024Nov 19, 2024

• sircovid

  Public
  C++

  •

  Other

  •6•28•17•5•Updated Nov 18, 2024Nov 18, 2024

• malariaverse

  Public
  💫 The Malariaverse 💫

  CSS

  •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• naomi.options

  Public
  R

  •

  Other

  •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024