Repositories list

• SmaltAlign

  Public
  Quick iterative alignment of reads against a given reference using smalt.

  Python

  •

  MIT License

  •1•3•6•0•Updated Jul 29, 2024Jul 29, 2024

• DiaMet

  Public
  Python

  •0•0•0•0•Updated Jun 25, 2024Jun 25, 2024

• NanoporeMet

  Public
  Python

  •0•0•0•0•Updated Apr 26, 2024Apr 26, 2024

• Coverage

  Public
  R

  •0•0•0•0•Updated Mar 12, 2024Mar 12, 2024

• DMS

  Public
  Infos and scripts for Data Management of Sequencing Data at the IMV

  Python

  •

  MIT License

  •1•1•3•0•Updated Mar 12, 2024Mar 12, 2024

• ONT_amplicon

  Public
  create consensus sequence from Oxford Nanopore Technologies (ONT) amplicon sequencing

  Python

  •0•0•0•0•Updated Feb 14, 2024Feb 14, 2024

• miseq-maintenance-status

  Public
  Provides an overview over the current maintenance status of an Illumina MiSeq sequencer

  Python

  •

  MIT License

  •1•0•0•0•Updated Feb 13, 2024Feb 13, 2024

• VirMet

  Public
  Set of tools for viral metagenomics.

  bioinformaticsbioinformatics-pipelinepython+ 7databasegenomencbimiseqviral-databaseviral-metagenomicsbacterial-database

  Python

  •5•13•6•0•Updated Nov 23, 2023Nov 23, 2023

• MinVar

  Public
  A tool to detect minority variants in HIV-1 and HCV populations

  Python

  •

  Other

  •6•1•8•0•Updated Jul 7, 2023Jul 7, 2023

• ptmismatch

  Public
  Examination of Primer-Template Mismatches

  R

  •

  Other

  •0•0•0•0•Updated Mar 6, 2023Mar 6, 2023

• runControl

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Dec 8, 2022Dec 8, 2022

• covid_spike_lineage

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated May 19, 2021May 19, 2021

• shiny-server

  Public archive
  A collection of Shiny Apps hosted on our shiny server. The apps can be accessed by browser within the UZH network.

  R

  •

  MIT License

  •0•0•3•0•Updated May 6, 2021May 6, 2021

• Utility2MOLIS

  Public
  Shiny app which takes the export of an SARS-CoV-2 E-Gen Cobas Utility run and returns a readable pdf report.

  R

  •

  MIT License

  •0•0•0•0•Updated Oct 27, 2020Oct 27, 2020

• EnvSeq

  Public
  Fully automated HIV-1 env plasmid sequencing analysis

  Python

  •

  GNU General Public License v2.0

  •1•1•0•0•Updated Jun 16, 2020Jun 16, 2020

• variant-calling

  Public
  computes all variants including indels from Illumina sequences compared to a reference sequence

  Python

  •

  MIT License

  •1•0•0•0•Updated Sep 11, 2019Sep 11, 2019

• virome-protocols

  Public
  version controlled protocols for virome sequencing

  0•1•0•0•Updated Mar 5, 2019Mar 5, 2019

• ECBC

  Public
  Subtype assignment and primer (constant region) trimming for antibody sequences with Error Correcting BarCodes

  R

  •

  MIT License

  •1•0•0•0•Updated Dec 24, 2018Dec 24, 2018

• sc-ansible

  Public
  Ansible playbook to configure instance on Science Cloud.

  Shell

  •0•0•0•0•Updated Oct 4, 2018Oct 4, 2018

• v3seq

  Public
  V3 loop from sequencing data

  Python

  •0•0•2•0•Updated Oct 1, 2018Oct 1, 2018

• sc-setup

  Public
  Configuration scripts for ScienceCloud

  Shell

  •0•0•0•0•Updated Sep 28, 2018Sep 28, 2018

• miseq-qc

  Public archive
  Different tools and scripts to trace quality of Illumina MiSeq runs

  Python

  •

  MIT License

  •0•1•0•0•Updated Jan 29, 2018Jan 29, 2018

• commap

  Public
  DMS analysis of envelope ligands

  Jupyter Notebook

  •0•0•0•0•Updated Sep 27, 2017Sep 27, 2017

• GermAb

  Public
  Pipeline to analyse germline antibody sequences

  R

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Jul 11, 2017Jul 11, 2017

• HCV_Sanger_Validation

  Public
  HCV_Sanger_Validation

  R

  •0•0•0•0•Updated Mar 28, 2017Mar 28, 2017

• neomerger

  Public archive
  Python

  •0•0•0•0•Updated Feb 9, 2017Feb 9, 2017

• DataSharingPolicy

  Public
  Adapted from Jeff Leek's guide "How to share data with a statistician"

  JavaScript

  •1•0•0•0•Updated Jan 16, 2014Jan 16, 2014