Repositories list

• web-components-graphql

  Public
  A TypeScript library that provides code for usng LIS Web Components with the LIS GraphQL Server

  JavaScript

  •

  Apache License 2.0

  •0•0•0•4•Updated Oct 21, 2024Oct 21, 2024

• gene-function-registry

  Public
  A set of records (pages) for collecting information about gene function in a human- and machine-readable format.

  Perl

  •2•0•0•3•Updated Oct 21, 2024Oct 21, 2024

• graphql-server

  Public
  A GraphQL server that supports the Legume Information System and related biodata websites

  graphqlmicroservicestypescript+ 4biologygraphql-serverinterminelegumes

  TypeScript

  •

  Apache License 2.0

  •3•2•9•3•Updated Oct 21, 2024Oct 21, 2024

• web-components

  Public
  A collection of Web Components for interacting with and visualizing biological data.

  typescriptbiologyweb-components+ 2litlegumes

  TypeScript

  •

  Apache License 2.0

  •3•5•12•7•Updated Oct 21, 2024Oct 21, 2024

• datastore-specifications

  Public
  Specifications for directory naming, file naming, file contents in the LIS datastore

  Perl

  •0•2•14•0•Updated Oct 18, 2024Oct 18, 2024

• datastore-metadata

  Public
  All the LIS Datastore YAML files under one roof.

  0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• LIS-autocontent

  Public
  Scrapes the LIS datastore and populates various configs and databases for deployment

  Python

  •

  Apache License 2.0

  •1•0•15•0•Updated Oct 14, 2024Oct 14, 2024

• microservices

  Public
  A collection of microservices developed and maintained by the Legume Information System

  pythonredisbioinformatics+ 4asynciodockermicroservicesgrpc

  Python

  •

  Apache License 2.0

  •2•3•19•67•Updated Oct 14, 2024Oct 14, 2024

• DSCensor

  Public
  Process LIS Datastore and Provide Web Facing RESTFUL API

  Python

  •

  Apache License 2.0

  •0•0•1•1•Updated Oct 14, 2024Oct 14, 2024

• jekyll-theme-legumeinfo

  Public
  A Jekyll theme for the Legume Information System and related biodata websites

  jekylljekyll-themebiology+ 3uikitweb-componentslegumes

  JavaScript

  •

  Apache License 2.0

  •1•1•5•1•Updated Oct 10, 2024Oct 10, 2024

• jekyll-starter-legumeinfo

  Public
  A Jekyll site that demonstrates how to use the legumeinfo Jekyll theme

  jekylljekyll-themebiology+ 3uikitweb-componentslegumes

  HTML

  •

  Apache License 2.0

  •1•1•1•0•Updated Oct 10, 2024Oct 10, 2024

• pandagma

  Public
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •1•11•0•0•Updated Oct 10, 2024Oct 10, 2024

• jekyll-legumeinfo

  Public
  legumeinfo.org built with Jekyll and served on GitHub Pages

  HTML

  •

  Apache License 2.0

  •1•4•11•1•Updated Oct 9, 2024Oct 9, 2024

• legumeinfo.org

  Public
  general site issues (or a place to log issues if you just want to put them somewhere and triage which repository they properly belong to later)

  HTML

  •0•0•14•0•Updated Sep 30, 2024Sep 30, 2024

• sven-documentation

  Public
  0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• jbrowse-plugin-gwas

  Public
  TypeScript

  •1•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• jbrowse-components

  Public
  Source code for JBrowse 2, a modern React-based genome browser

  TypeScript

  •

  Apache License 2.0

  •62•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• ShinyCell

  Public
  Shiny Interactive Web Apps for Single-Cell Data

  R

  •

  GNU General Public License v3.0

  •57•0•0•0•Updated Sep 27, 2024Sep 27, 2024

• gcv-docker-compose

  Public
  Resources for running the Genome Context Viewer with Docker Compose

  Shell

  •

  Apache License 2.0

  •1•2•5•0•Updated Sep 27, 2024Sep 27, 2024

• sequenceserver

  Public
  Intuitive local web frontend for the BLAST bioinformatics tool

  JavaScript

  •

  GNU Affero General Public License v3.0

  •113•0•2•0•Updated Sep 24, 2024Sep 24, 2024

• Funnotate

  Public
  Functional annotation of FASTA sequences

  JavaScript

  •

  Apache License 2.0

  •0•2•5•0•Updated Sep 22, 2024Sep 22, 2024

• glycinemine

  Public
  An InterMine for Glycine species

  Java

  •

  GNU Lesser General Public License v3.0

  •1•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• mine-dbmodel-resources

  Public
  dbmodel/resources files common to all mines

  0•0•0•0•Updated Sep 7, 2024Sep 7, 2024

• datastore-registry

  Public
  Registry of unique KEY4 keys and their associated Genus-species-collection information

  Perl

  •0•1•0•0•Updated Sep 6, 2024Sep 6, 2024

• taxon-symbology

  Public
  A TypeScript library for consistent coloring of visualizations by genus & species.

  TypeScript

  •

  Apache License 2.0

  •1•1•1•11•Updated Aug 30, 2024Aug 30, 2024

• website-ui-specs

  Public
  User interface specification of components built for the Jekyll sites.

  Apache License 2.0

  •0•0•4•0•Updated Aug 28, 2024Aug 28, 2024

• h5ai

  Public
  HTTP web server index for Apache httpd, lighttpd and nginx.

  JavaScript

  •591•0•0•0•Updated Aug 28, 2024Aug 28, 2024

• legumemine

  Public
  An InterMine which contains multiple legumes

  Java

  •

  GNU Lesser General Public License v3.0

  •0•0•1•0•Updated Aug 26, 2024Aug 26, 2024

• mine-webapp

  Public
  Webapp components common to all mines: css, js, images, model, themes

  CSS

  •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

• divbrowse

  Public
  A web application for interactive visualization and exploratory data analysis of variant call matrices

  Svelte

  •

  MIT License

  •3•0•0•0•Updated Aug 26, 2024Aug 26, 2024