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    • ASMC

      Public
      ASMC is a precision tool for deciphering the amino acid diversity that composes the active site of a given homologous protein family.
      Python
      Other
      0400Updated Dec 23, 2024Dec 23, 2024
    • Build a partitioned pangenome graph from microbial genomes
      Python
      Other
      30244110Updated Dec 18, 2024Dec 18, 2024
    • MicroScope Platform User Documentation
      6300Updated Dec 17, 2024Dec 17, 2024
    • netsyn

      Public
      NetSyn is a tool to detect conserved genomic contexts (i.e. synteny conservation) among a list of protein targets.
      Python
      Other
      1710Updated Nov 15, 2024Nov 15, 2024
    • CAESAR

      Public
      Python
      0000Updated Sep 30, 2024Sep 30, 2024
    • Test data to be used for automated testing with the pangbank pipeline.
      0000Updated Sep 11, 2024Sep 11, 2024
    • asmc_2016

      Public
      ASMC code from de Melo-Minardi et al. (2010) [doi: 10.1093/bioinformatics/btq595], updated in 2016.
      Shell
      Other
      0000Updated Apr 16, 2024Apr 16, 2024
    • Conda recipes for the bioconda channel.
      Shell
      MIT License
      3.3k000Updated Feb 13, 2023Feb 13, 2023
    • phigaro

      Public
      Phigaro is a scalable command-line tool for predicting phages and prophages
      HTML
      MIT License
      15000Updated Apr 28, 2022Apr 28, 2022
    • PlaScope

      Public
      🔬 ⭕ Plasmid exploration of bacterial genomes
      Roff
      GNU General Public License v3.0
      41831Updated Mar 2, 2022Mar 2, 2022
    • C
      Other
      0461Updated Dec 17, 2021Dec 17, 2021
    • tenacity

      Public
      Retrying library for Python
      Python
      Apache License 2.0
      284100Updated Mar 18, 2021Mar 18, 2021