Repositories list

• DrosophilidDBM

  Public
  R code for Deformation Based Morphometry across Drosophilid species

  R

  •0•1•0•0•Updated Dec 2, 2024Dec 2, 2024

• BridgingRegistrations

  Public
  Bridging registrations to convert between different Drosophila template brains

  3•5•3•0•Updated Oct 14, 2024Oct 14, 2024

• RANN

  Public
  R package providing fast nearest neighbour search (wraps ANN library)

  rnearest-neighborsr-package+ 2nearest-neighboursann-library

  R

  •13•58•4•0•Updated Aug 25, 2024Aug 25, 2024

• racq4

  Public
  Analysis of acq4 data in R

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

• STAR

  Public
  Keeping https://github.com/cran/STAR alive

  R

  •0•0•0•0•Updated Jun 12, 2024Jun 12, 2024

• MicroManagerStrobePlugin

  Public
  A plugin developed for MicroManager / ImageJ to coordinate pulsed LED illumination with image acquisition

  Java

  •0•0•0•0•Updated Jan 30, 2024Jan 30, 2024

• catnat

  Public
  neuroanatomy toolbox – CATMAID extension functions

  R

  •2•1•5•0•Updated Aug 31, 2023Aug 31, 2023

• ImageJMacros

  Public
  General Jefferis Lab ImageJ macros – e.g. split lsms

  ImageJ Macro

  •2•1•0•0•Updated Jul 1, 2023Jul 1, 2023

• skeleton-to-MIP

  Public
  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 21, 2023Apr 21, 2023

• 2023_cVA_Taisz_Galili

  Public
  Public code for Taisz, Galili et al. (2023)

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 21, 2023Apr 21, 2023

• flybrainenv

  Public
  Shared login scripts and other configuration info for the lmb linux cluster

  Shell

  •0•0•1•0•Updated Sep 21, 2022Sep 21, 2022

• NBLAST_on-the-fly

  Public
  Web application demonstrating NBLAST neuron similarity/search

  R

  •3•5•7•0•Updated Feb 8, 2022Feb 8, 2022

• flywatch

  Public
  Code to analyse movies of flies – principally based on Yoshi Aso's (Janelia) behaviour rig

  rdrosophila-behaviourvideo-tracking

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 27, 2021Jul 27, 2021

• jlabvisuals

  Public
  A repo for visual materials used in lab papers, presentations and posters

  GNU General Public License v3.0

  •1•2•0•0•Updated Jun 26, 2021Jun 26, 2021

• MakeAverageBrain

  Public
  Make average template brains using CMTK’s avg_adm tool

  Shell

  •3•4•1•0•Updated Jan 11, 2021Jan 11, 2021

• jimpipeline

  Public
  fijiimage-registrationr

  R

  •0•0•0•0•Updated Sep 11, 2020Sep 11, 2020

• lhns

  Public
  A repository for neuron data related to the fly lateral horn

  R

  •

  GNU General Public License v3.0

  •2•1•3•0•Updated Aug 20, 2020Aug 20, 2020

• bridging_on-the-fly

  Public
  R

  •0•0•8•0•Updated May 13, 2020May 13, 2020

• flycircuitreg

  Public
  HTML

  •0•0•0•0•Updated Nov 14, 2019Nov 14, 2019

• MirrorRegistrations

  Public
  Mirroring points in various Drosophila melanogaster template brain spaces

  Shell

  •1•1•1•0•Updated Nov 3, 2019Nov 3, 2019

• bftools

  Public
  Batchfile

  •0•0•0•0•Updated Nov 3, 2019Nov 3, 2019

• nblastwwwjb

  Public
  Jekyll bootstrap version of nblast website

  Ruby

  •0•0•0•0•Updated Jul 13, 2019Jul 13, 2019

• LHlibrary

  Public
  A R Shiny app for sharing and viewing lateral horn data

  rshinyneuroanatomy+ 1neuroanatomy-toolbox

  R

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated May 31, 2019May 31, 2019

• physplitdata

  Public
  shahar's versioned raw data and db dump

  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated May 31, 2019May 31, 2019

• physplit.analysis

  Public
  Packaged and versioned Analysis functions for Shahar's cells

  relectrophysiologydrosophila-melanogaster

  R

  •

  GNU General Public License v3.0

  •3•1•0•0•Updated May 31, 2019May 31, 2019

• 2018lhsplitcode

  Public
  Analysis code for 2018 split paper

  R

  •

  MIT License

  •1•1•3•0•Updated Apr 29, 2019Apr 29, 2019

• drvid

  Public
  Access to DVID API

  R

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Apr 4, 2019Apr 4, 2019

• lhnsold

  Public
  Skeleton data for neurons associated with the lateral horn of Drosophila melanogaster

  R

  •0•0•1•0•Updated Mar 20, 2018Mar 20, 2018

• DrosophilidBridgingRegistrations

  Public
  Bridging registrations to convert between different Drosophila species template brains

  2•1•0•0•Updated Feb 5, 2018Feb 5, 2018

• V2LH-R

  Public
  Some analysis associated with studies of MB-V2a neurons

  R

  •0•0•0•0•Updated Sep 8, 2017Sep 8, 2017