Repositories list

• Braun_et_al_2024

  Public
  R

  •0•1•0•0•Updated Dec 8, 2024Dec 8, 2024

• Grosse_et_al_2024

  Public
  Code used to produce the results for the linked paper.

  0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• MultiQC

  Public
  Aggregate results from bioinformatics analyses across many samples into a single report.

  JavaScript

  •

  GNU General Public License v3.0

  •606•1•0•0•Updated Sep 25, 2024Sep 25, 2024

• Fandrei_et_al_2024

  Public
  Supplementary code for the analysis of bridging with BsAb for BCMA CAR-T cell therapy in relapsed/refractory Multiple Myeloma.

  medicinebioinformatics-analysismulti-omics

  R

  •0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

• 2024_Weber_et_al_ROR2_CAR_T

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 11, 2024Mar 11, 2024

• Rade_et_al_tcell_2023

  Public
  R

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Nov 20, 2023Nov 20, 2023

• Rade_Grieb_et_al_2023

  Public
  R

  •0•3•0•0•Updated Sep 3, 2023Sep 3, 2023

• tumor_deconvolution

  Public
  Tools to infer the immune cell composition of tumor tissue from RNA-seq samples.

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 7, 2020Dec 7, 2020

• gene_expression_deconvolution

  Public
  Tools to allow the reconstruction of tumor cell specific gene expression patterns from bulk RNA-seq samples

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated Nov 23, 2020Nov 23, 2020

• uap

  Public
  Universal Analysis Pipeline - A python tool for controlled and coordinated data analysis

  bioinformaticsbioinformatics-pipelineworkflow-management-system+ 1bioinformatics-analysis

  Python

  •

  GNU General Public License v3.0

  •12•1•0•1•Updated Oct 30, 2020Oct 30, 2020

• geotag

  Public
  A small utility to quickly tag studies and samples from the NCBI Gene Expression Omnibus (GEO) with a curses interface.

  bioinformaticsncbi-geopython+ 3cursestag-studiessoft-files

  Python

  •

  GNU General Public License v3.0

  •1•3•0•0•Updated Jun 15, 2020Jun 15, 2020

• duplicates

  Public
  Utilities to find duplicated files and directories in large file systems.

  bash-scriptslurmduplicate-files+ 4hash-tablesduplicate-directoriesduplicated-hasheshashed-files

  Shell

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Jun 15, 2020Jun 15, 2020

• multi_bary_plot

  Public
  Plot in generalized barycentric coordinates

  matplotlibbarycentric-coordinatesbarycentric+ 3plotdimensionspolygon

  Python

  •

  Other

  •1•1•0•0•Updated Apr 16, 2019Apr 16, 2019