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    • HERBS

      Public
      Python
      MIT License
      14000Updated Oct 24, 2022Oct 24, 2022
    • Open Ephys plugin to detect hippocampal ripple events
      C++
      5000Updated Mar 31, 2022Mar 31, 2022
    • The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More details can be found in the original paper "Large-scale two-photon calcium imaging in freely moving mice(2021)".
      MATLAB
      MIT License
      20000Updated Mar 18, 2022Mar 18, 2022
    • All materials for the Open Ephys course on Extracellular Electrophysiology Acquisition, developed as a Cajal Advanced Neuroscience Training Neurokit.
      CSS
      3000Updated Jan 17, 2022Jan 17, 2022
    • CSS
      Other
      4000Updated Jan 17, 2022Jan 17, 2022
    • An open list of tools & resources for 'spikes': recordings of single-unit neural activity (action potentials).
      2000Updated Aug 26, 2021Aug 26, 2021
    • NeuroKit

      Public
      NeuroKit2: The Python Toolbox for Neurophysiological Signal Processing
      Python
      MIT License
      429000Updated Aug 13, 2021Aug 13, 2021
    • SDK for running DeepLabCut on a live video stream
      Python
      Other
      49000Updated Aug 5, 2021Aug 5, 2021
    • ciatah

      Public
      CIAtah (pronounced cheetah, formerly calciumImagingAnalysis [ciapkg]): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs.
      MATLAB
      GNU General Public License v3.0
      22000Updated May 12, 2021May 12, 2021
    • minian

      Public
      miniscope analysis pipeline with interactive visualizations
      Python
      GNU General Public License v3.0
      38000Updated May 6, 2021May 6, 2021
    • This MKS TFT35 firmware source code and build by IAR platform ...
      C
      GNU General Public License v3.0
      42000Updated Apr 23, 2021Apr 23, 2021
    • Repository for collecting materials from nwb hackathons
      Jupyter Notebook
      83000Updated Apr 18, 2021Apr 18, 2021
    • encoder

      Public
      Atmel AVR C++ RotaryEncoder Implementation
      C++
      161000Updated Jan 23, 2021Jan 23, 2021
    • jsPsych

      Public
      A JavaScript library for creating and running behavioral experiments in a web browser
      JavaScript
      MIT License
      681000Updated Jan 23, 2021Jan 23, 2021
    • BonZeb

      Public
      C#
      MIT License
      2000Updated Jan 16, 2021Jan 16, 2021
    • Autocage

      Public
      System for fully autonomous home-cage mouse behavioral and optogenetic experiments
      C++
      MIT License
      3000Updated Dec 24, 2020Dec 24, 2020
    • sleap

      Public
      A deep learning framework for multi-animal pose tracking.
      Python
      Other
      99000Updated Dec 24, 2020Dec 24, 2020
    • NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files
      JavaScript
      Other
      16000Updated Dec 16, 2020Dec 16, 2020
    • cellpose

      Public
      a generalist algorithm for cellular segmentation
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      410000Updated Dec 14, 2020Dec 14, 2020
    • espocrm

      Public
      EspoCRM open source CRM application
      PHP
      GNU General Public License v3.0
      588000Updated Dec 1, 2020Dec 1, 2020
    • JRCLUST

      Public
      JRCLUST
      MATLAB
      Apache License 2.0
      22000Updated Nov 30, 2020Nov 30, 2020
    • pMAT

      Public
      Fiber Photometry Modular Analysis Tool Suite
      MATLAB
      GNU General Public License v3.0
      10000Updated Nov 19, 2020Nov 19, 2020
    • A course for brains interested in brains (not tools interested in tools)
      Assembly
      Other
      16000Updated Nov 18, 2020Nov 18, 2020
    • Material for Pybrain 2020 MNE-Python workshop
      Jupyter Notebook
      GNU General Public License v3.0
      69000Updated Nov 17, 2020Nov 17, 2020
    • aisynphys

      Public
      Analysis tools specific to the aiephys multipatch project.
      Python
      Other
      19000Updated Nov 13, 2020Nov 13, 2020
    • BORIS

      Public
      Behavioral Observation Research Interactive Software
      Python
      GNU General Public License v3.0
      36000Updated Nov 8, 2020Nov 8, 2020
    • 0000Updated Oct 20, 2020Oct 20, 2020
    • an open source multi-threaded eye tracker
      C++
      GNU General Public License v3.0
      8000Updated Oct 9, 2020Oct 9, 2020
    • gui-docs

      Public
      Documentation for the Open Ephys GUI
      Python
      20000Updated Oct 8, 2020Oct 8, 2020
    • mouseVR

      Public
      Harvey Lab miniaturized mouse VR rig for virtual navigation and decision-making tasks
      MATLAB
      MIT License
      11000Updated Oct 3, 2020Oct 3, 2020