Repositories list

• LowPassKaryo

  Public
  An R pipeline to process low pass whole genome sequencing and call copy number variation

  R

  •

  MIT License

  •3•1•0•0•Updated Jul 10, 2024Jul 10, 2024

• BABS-RNASeq

  Public
  RNASeq Best Practice Analysis

  Nextflow

  •

  MIT License

  •2•7•0•1•Updated Jan 31, 2022Jan 31, 2022

• Coxph_Surv_R

  Public
  Doing Coxph survival analysis in R

  HTML

  •0•1•0•0•Updated May 15, 2020May 15, 2020

• DRB_TT-seq

  Public
  Scripts for the analysis of TT-seq and DRB/TT-seq data.

  HTML

  •

  GNU General Public License v3.0

  •1•9•0•0•Updated Mar 11, 2020Mar 11, 2020

• ZebrafishDevelopingHindbrainAtlas

  Public
  A single cell transcriptome atlas of the developing zebrafish hindbrain.

  HTML

  •6•13•0•0•Updated Jan 2, 2020Jan 2, 2020

• BABS-ASF-qualityControl

  Public
  A quality control pipeline for ASF

  Nextflow

  •0•0•0•0•Updated May 10, 2019May 10, 2019

• BABS-MultiQC-QualityControl

  Public
  MultiQC plugins for the BABS-QualityControl pipeline

  Python

  •0•0•0•0•Updated Dec 18, 2018Dec 18, 2018

• qualityControl_byBABS

  Public
  Nextflow Quality Control Analysis Pipeline

  Nextflow

  •0•1•0•0•Updated Nov 29, 2018Nov 29, 2018

• Interview_2018

  Public
  0•0•0•0•Updated Nov 8, 2018Nov 8, 2018

• BABS-ATACSeqPE

  Public
  This pipeline has been superceeded. Please use >>>

  bioinformaticspipelinenextflow+ 4bioinformatics-pipelineatac-seqpaired-endatacseq

  Groovy

  •

  MIT License

  •0•1•0•0•Updated Oct 24, 2018Oct 24, 2018

• BABS-aDNASeq

  Public
  An ancient DNA nextflow analysis pipeline

  Nextflow

  •

  Other

  •0•2•0•0•Updated Sep 14, 2018Sep 14, 2018

• BABS-MNASeqPE

  Public archive
  This pipeline has been superceeded. Please use >>>

  bioinformaticspipelinenextflow+ 5bioinformatics-pipelinepaired-endnucleosome-positioningnucleosomemnase-seq

  Groovy

  •

  MIT License

  •0•0•0•0•Updated Sep 13, 2018Sep 13, 2018

• rnaSeq_byBABS

  Public
  Nextflow RNA-Seq Analysis Pipeline

  pipelinenextflow

  Nextflow

  •5•5•0•0•Updated Apr 19, 2018Apr 19, 2018

• nextflow_toolbox

  Public
  A toy Nextflow pipeline that contains useful programming constructs

  Nextflow

  •0•0•0•0•Updated Apr 19, 2018Apr 19, 2018