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    12 repositories

    • sequencing-report-service

      Public
      Service producing and displaying sequencing reports.
      HTML
      •
      MIT License
      •3•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • arteria

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • arteria-delivery

      Public
      Micro-service to carry out deliveries on Uppmax
      Python
      •
      MIT License
      •9•0•0•4•Updated May 16, 2024May 16, 2024

    • arteria-runfolder

      Public
      A webservice used to monitor runfolders from Illumina instruments and check what state they are in (e.g. ready to process or not).
      Python
      •
      MIT License
      •14•5•0•0•Updated Mar 21, 2024Mar 21, 2024

    • arteria-bcl2fastq

      Public
      Provides a simple http-interface for Illumina bcl2fastq
      Python
      •
      MIT License
      •9•3•0•0•Updated Jul 3, 2023Jul 3, 2023

    • arteria-checksum

      Public
      Service for checking md5sums
      Python
      •5•0•0•0•Updated Mar 13, 2023Mar 13, 2023

    • arteria-packs

      Public
      StackStorm packs to automate sequencing center operations
      Python
      •
      MIT License
      •19•9•2•0•Updated Dec 6, 2022Dec 6, 2022

    • arteria-core

      Public
      The arteria python module is a library of helper classes for the Arteria project.
      Python
      •
      MIT License
      •8•4•0•0•Updated Jul 13, 2022Jul 13, 2022

    • arteria-project.github.io

      Public
      The Arteria project organization page: http://arteria-project.github.io
      1•0•0•0•Updated Nov 18, 2020Nov 18, 2020

    • arteria-siswrap

      Public
      Wraps scripts from Sisyphus (https://github.com/Molmed/sisyphus) with a http-interface.
      Python
      •
      MIT License
      •4•0•0•0•Updated Nov 29, 2017Nov 29, 2017

    • arteria-provisioning

      Public archive
      DEPRECATED: This repo has been decommissioned. SNP&SEQ configures its environment from private repos. Other users are recommended to follow the generic installation instructions for 1) Stackstorm, 2) arteria-packs, 3) the Arteria services that are of interest. Old description: Provisioning for the Arteria project
      Shell
      •
      MIT License
      •6•0•5•0•Updated May 12, 2016May 12, 2016

    • arteria-lib

      Public archive
      DEPRECATE: This repo has been split up into multiple smaller once. Don't fork from here. Old description: Contains the arteria core python library as well as smaller services.
      Python
      •2•0•0•0•Updated Aug 24, 2015Aug 24, 2015