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@abims-sbr ABiMS - Station Biologique de Roscoff - France - CNRS/SU

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    26 repositories

    • adaptsearch

      Public
      A pipeline for the search of adaptive mutations and positively selected genes from RNASeq orthologs
      Python
      •
      GNU General Public License v3.0
      •4•0•5•0•Updated Oct 7, 2024Oct 7, 2024

    • ansible-sequenceserver

      Public
      https://galaxy.ansible.com/abims_sbr/sequenceserver: an Ansible Role that installs SequenceServer on Linux and deploys one NCBI BLAST+ server for each BLAST database, reverse-proxied by NGINX, submitting jobs on a SLURM HPC cluster
      querydatabaseblastsequencesequenceserver
      Jinja
      •
      MIT License
      •0•0•6•1•Updated Aug 5, 2024Aug 5, 2024

    • docker_slurm_exec

      Public
      Dockerfile
      •2•0•0•0•Updated Mar 5, 2024Mar 5, 2024

    • aozan

      Public
      An automated post sequencing data processing pipeline for Illumina HiSeq
      HTML
      •
      Other
      •4•0•0•0•Updated Dec 11, 2023Dec 11, 2023

    • configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •278•0•0•0•Updated Jan 17, 2023Jan 17, 2023

    • tripal_linkout

      Public
      The Linkout module provides a web service for generation of external links
      PHP
      •4•0•0•1•Updated Oct 11, 2022Oct 11, 2022

    • shiny_transcriptomic_aggregator_ectocarpus

      Public
      R
      •
      GNU Affero General Public License v3.0
      •0•0•3•0•Updated May 30, 2022May 30, 2022

    • ansible-singularity

      Public
      https://galaxy.ansible.com/lecorguille/singularity
      GNU General Public License v3.0
      •8•4•4•5•Updated May 20, 2022May 20, 2022

    • GGA_Cloud

      Public
      These Ansible recipes allow the deployment of a Virtual Machine in an OpenStack cloud via the Terraform software, the installation of the GGA environment and its dependencies, as well as loading data into the Galaxy library.
      Jinja
      •0•1•1•0•Updated Apr 29, 2022Apr 29, 2022

    • biomaj-data

      Public
      Sample community db properties and postprocesses
      Perl
      •3•0•0•0•Updated Aug 20, 2021Aug 20, 2021

    • D4_marine_eukaryote_genomics_portal_docker

      Public
      Marine Eukaryote Genomics Portal Docker
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•2•Updated Jan 12, 2021Jan 12, 2021

    • tools-abims

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 8, 2021Jan 8, 2021

    • ansible-gitlab-runner

      Public
      Ansible role to install gitlab-runner (Major update 1.2.0 please verify your jobs!)
      Python
      •
      MIT License
      •268•0•0•0•Updated Nov 19, 2020Nov 19, 2020

    • D4_marine_eukaryote_genomics_portal

      Public
      EOSC-Life Demonstrator 4
      Python
      •1•0•0•0•Updated Sep 23, 2020Sep 23, 2020

    • goslim-analysis

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 27, 2020Jul 27, 2020

    • bioanalyse_protocoles

      Public
      A list of bio-analyse protocoles
      0•0•0•1•Updated Nov 19, 2019Nov 19, 2019

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.3k•0•0•0•Updated Oct 22, 2018Oct 22, 2018

    • WinstonCleaner

      Public
      Python
      •
      Other
      •2•0•0•0•Updated May 29, 2018May 29, 2018

    • tools-iuc

      Public
      Tool Shed repositories maintained by the Intergalactic Utilities Commission
      Python
      •
      MIT License
      •441•0•0•0•Updated Mar 6, 2018Mar 6, 2018

    • trinityrnaseq

      Public
      Trinity RNA-Seq de novo transcriptome assembly
      Perl
      •
      BSD 3-Clause "New" or "Revised" License
      •320•0•0•0•Updated Feb 23, 2018Feb 23, 2018

    • MCSC_Decontamination

      Public
      Scripts and documentations on the MCSC decontamination method
      Perl
      •2•0•0•0•Updated Sep 29, 2017Sep 29, 2017

    • drap

      Public
      Fork of DRAP (http://www.sigenae.org/drap) modified for ABiMS cluster
      Perl
      •0•1•1•0•Updated Jul 20, 2017Jul 20, 2017

    • HoloVir

      Public
      HoloVir is a robust and flexible data analysis pipeline that provides an optimised and validated workflow for taxonomic and functional characterisation of viral metagenomes
      Shell
      •6•0•0•0•Updated Jul 6, 2017Jul 6, 2017

    • training-material

      Public
      A collection of training material from offered Galaxy courses
      HTML
      •
      Other
      •922•0•0•0•Updated Feb 27, 2017Feb 27, 2017

    • galaxy-blastprivate

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 20, 2017Jan 20, 2017

    • galaxy-blastvisu

      Public
      Visualisation for Blast XML outputs under Galaxy
      Mako
      •1•0•4•0•Updated Mar 30, 2016Mar 30, 2016