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@VisionandCognition Vision and Cognition software

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    32 repositories

    • NHP-BIDS

      Public
      Code for NHP-MRI (e.g., Retinotopy, Curve-tracing, Figure-ground) using NiPype and the BIDS format.
      Shell
      •1•7•1•0•Updated Oct 29, 2024Oct 29, 2024

    • NHP-TemplateScripts

      Public
      Shell
      •0•1•0•0•Updated Oct 10, 2024Oct 10, 2024

    • Tracker

      Public
      Vision and Cognition scientific software
      MATLAB
      •2•1•2•0•Updated Jun 12, 2024Jun 12, 2024

    • precon_all

      Public
      precon_all surface pipline
      Shell
      •5•0•0•0•Updated Apr 12, 2024Apr 12, 2024

    • pRF_widefield

      Public
      MATLAB code for analysing pRF mapping sessions from the wide-field microscope
      0•0•0•0•Updated Dec 11, 2023Dec 11, 2023

    • Tracker-MRI

      Public
      The Tracker scripts for the MRI experiments. Software for experiment control.
      MATLAB
      •0•4•0•0•Updated Dec 6, 2023Dec 6, 2023

    • NHP-pycortex

      Public
      Adaptation for NHP brains and pipelines. Pycortex is a python-based toolkit for surface visualization of fMRI data
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •139•3•0•0•Updated Nov 29, 2023Nov 29, 2023

    • NHP-SkullFromMR

      Public
      Shell
      •0•0•0•0•Updated Oct 19, 2023Oct 19, 2023

    • MOCA

      Public
      Maps of conscious awareness: An analysis repository for consciousness research projects
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Jul 7, 2023Jul 7, 2023

    • NHP-Process-MRI

      Public
      Python
      •4•6•1•0•Updated Aug 5, 2022Aug 5, 2022

    • NHP-BrainShift

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 2, 2022Feb 2, 2022

    • Mouse_ICMS

      Public
      C++
      •0•0•0•0•Updated Jan 31, 2022Jan 31, 2022

    • Mouse_ACh

      Public
      MATLAB
      •0•0•0•0•Updated Jan 25, 2022Jan 25, 2022

    • workmate-match

      Public
      Deep WorkMATe model with learned Biologically Plausible Matching
      Python
      •0•1•0•0•Updated Dec 9, 2021Dec 9, 2021

    • NHP-Freesurfer

      Public
      Procedure to create monkey brain surfaces and project results to it
      Jupyter Notebook
      •
      MIT License
      •5•11•0•0•Updated Nov 11, 2021Nov 11, 2021

    • DeepMReye

      Public
      Main model and preprocessing code
      Python
      •
      GNU Lesser General Public License v3.0
      •35•0•0•0•Updated Nov 5, 2021Nov 5, 2021

    • NHP-PRF

      Public
      Monkey PRF analysis
      Jupyter Notebook
      •14•0•1•0•Updated Oct 18, 2021Oct 18, 2021

    • NHP-BrainExtraction

      Public
      Python
      •18•0•0•0•Updated Dec 26, 2020Dec 26, 2020

    • MNCP

      Public
      Matlab Neuropixels Control Protocol
      MATLAB
      •
      Apache License 2.0
      •1•0•0•0•Updated Dec 17, 2020Dec 17, 2020

    • ClientGLX

      Public
      MATLAB
      •1•0•0•0•Updated Dec 16, 2020Dec 16, 2020

    • Acquipix

      Public
      Neuropixels Acquisition toolbox for Matlab
      MATLAB
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Dec 14, 2020Dec 14, 2020

    • arcade

      Public
      C
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 13, 2020Jun 13, 2020

    • OpenStereotaxy

      Public
      Python-based tools for generating customized neural implants and surgical planning using open-source softwares.
      Python
      •3•0•0•0•Updated Feb 25, 2020Feb 25, 2020

    • pypreclin

      Public
      MATLAB
      •
      Other
      •4•0•0•0•Updated Feb 4, 2020Feb 4, 2020

    • Planner

      Public
      MR Guided Planning Software
      MATLAB
      •16•0•0•0•Updated Jan 30, 2019Jan 30, 2019

    • NPMK

      Public
      Neural Processing Matlab Kit is a set of functions for loading and manipulating data from Blackrock Microsystems' data files (.CCF, .NEV, .NSx).
      MATLAB
      •57•0•0•0•Updated Aug 14, 2018Aug 14, 2018

    • KiloSort

      Public
      GPU code for spike sorting
      MATLAB
      •
      GNU General Public License v2.0
      •100•0•0•0•Updated May 22, 2018May 22, 2018

    • MVPA_Scripts-master

      Public
      scripts library for submitting jobs to surf sara
      MATLAB
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Oct 30, 2017Oct 30, 2017

    • Git-Workshop

      Public
      Resources for Interactive Workshop
      0•0•0•0•Updated Jul 13, 2017Jul 13, 2017

    • ElectroNavToolbox

      Public
      A MATLAB Toolbox for MRI-guided electrode navigation
      MATLAB
      •
      Other
      •3•0•0•0•Updated Apr 17, 2017Apr 17, 2017