Repositories list

• CellMet

  Public
  3D cell shape analysis from labelled image

  pythonimage-analysis

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•4•1•0•Updated Nov 18, 2024Nov 18, 2024

• .github

  Public
  Homepage for the presentation of TimSaundersLab

  0•0•0•0•Updated Aug 8, 2024Aug 8, 2024

• image_based_particle_model

  Public
  Code for Zhu et al paper

  pythonpaper

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 26, 2024Apr 26, 2024

• Aster-Repulsion-Codes

  Public
  For de-Carvalho et al

  papermatlabdrosophila

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 21, 2024Feb 21, 2024

• CellPacking

  Public
  This is flat monolayer simulation package for T1 transition under stress

  pythonpaperdrosophila+ 1vertex-model

  Jupyter Notebook

  •1•0•0•0•Updated Jan 25, 2024Jan 25, 2024

• CNS-Paper

  Public
  For Karkali et al Developmental Cell 2022

  papermatlabdrosophila

  MATLAB

  •

  Creative Commons Zero v1.0 Universal

  •1•0•0•0•Updated Jan 23, 2023Jan 23, 2023

• MuscleSeg

  Public
  Segmentation software for muscle, from Mendieta-Serrano 2022

  pythonpaperzebrafish

  Python

  •1•0•0•0•Updated Aug 22, 2022Aug 22, 2022