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    148 repositories

    • COPO-documentation

      Public
      COPO documentation was created using the Sphinx reStructuredText (reST) markup language which is hosted on readthedocs.io. The documentation uses Sphinx.
      metadatasphinxreadthedocssphinx-documentationcopocopo-projectcopo-docs
      Python
      •
      Apache License 2.0
      •0•2•0•1•Updated Jan 15, 2025Jan 15, 2025

    • rfparser

      Public
      Parse ResearchFish publications to update CKAN
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • TransfurOCR

      Public
      Transferring open chromatin predictions across mammals
      0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

    • COPO-production

      Public
      COPO is a Django-based platform that serves as a metadata broker to describe research data per FAIR principles. It supports community-recognised metadata standards, ensuring data is discoverable, interoperable, and accessible. Submitted data is accessible via public repositories, promoting long-term preservation and reuse across systems.
      researchgenomicsomicsbiodiversitylife-sciencesmetadata-broker
      JavaScript
      •
      MIT License
      •2•1•0•0•Updated Jan 13, 2025Jan 13, 2025

    • SingleCellSchemas

      Public
      For resources relating to EI Cellgen ISP
      Python
      •
      MIT License
      •0•0•1•0•Updated Jan 13, 2025Jan 13, 2025

    • cvanmf

      Public
      (bi)crossvalidation for NMF rank selection, and visualisation/analysis tools
      Python
      •
      GNU General Public License v2.0
      •1•1•0•0•Updated Jan 12, 2025Jan 12, 2025

    • nanopore-mod-course-2024

      Public
      Contains materials used for the nanopore base modification course at the Earlham Institute that ran in 2024
      CSS
      •
      Other
      •114•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • grassroots_services_django_web

      Public
      JavaScript
      •1•0•0•10•Updated Dec 18, 2024Dec 18, 2024

    • eisca

      Public
      A single-cell RNA-seq pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.
      Nextflow
      •
      MIT License
      •1•1•0•0•Updated Dec 12, 2024Dec 12, 2024

    • grassroots-service-field-trial

      Public
      A Grassroots service for storing the data for field trials
      C
      •
      Apache License 2.0
      •0•2•0•0•Updated Dec 10, 2024Dec 10, 2024

    • Aequatus

      Public
      Earlham Institute's Synteny Browser
      JavaScript
      •
      GNU General Public License v3.0
      •0•7•1•22•Updated Dec 5, 2024Dec 5, 2024

    • reposyncer

      Public
      GitHub workflow to sync various repo mirrors
      MIT License
      •2•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • TGACBrowser

      Public
      TGAC's Genome Browser
      JavaScript
      •0•10•1•31•Updated Dec 2, 2024Dec 2, 2024

    • grassroots-build-tools

      Public
      Scripts to manage the building of the different Grassroots infrastructure components
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

    • grassroots-service-polymarker

      Public
      The Polymarker service for the Grassroots infrastructure.
      C
      •
      Apache License 2.0
      •0•2•0•0•Updated Nov 24, 2024Nov 24, 2024

    • grassroots-user-docs

      Public
      HTML
      •0•0•0•0•Updated Nov 24, 2024Nov 24, 2024

    • grassroots-docs

      Public
      Documentation about the Grassroots Infrastructure
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 24, 2024Nov 24, 2024

    • grassroots-client-frictionless-data

      Public
      A tool to extract the resources from a Grassroots Frictionless Data Package
      C
      •
      Apache License 2.0
      •0•2•0•0•Updated Nov 24, 2024Nov 24, 2024

    • grassroots-server-apache-httpd

      Public
      The Apache httpd server module for the Grassroots infrastructure
      C
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 24, 2024Nov 24, 2024

    • grassroots-core

      Public
      The core libraries of the Grassroots infratructure
      C
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 24, 2024Nov 24, 2024

    • grassroots-tutorials

      Public
      A set of tutorials on using the various parts of Grassroots
      0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • FlowFI

      Public
      FlowFI is a python-based package for selecting important features for gating of flow cytometry events and analysis of these features.
      Python
      •1•0•0•0•Updated Nov 10, 2024Nov 10, 2024

    • grassroots-accessions-service

      Public
      A Grassroots service for managing and querying various different plant accessions
      C
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • EDP

      Public
      mainline production repository for EDP
      JavaScript
      •
      MIT License
      •2•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • simple_templates

      Public
      A module to get the correct data for a project on the opendata portal
      C
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • opendata-projects

      Public
      A tool to set the iRODS metadata from a projects store
      Python
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • QCPipeline

      Public
      QC pipeline for genome assemblies
      Shell
      •
      MIT License
      •1•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • Basecall2Assembly

      Public
      Snakemake pipeline that takes raw ONT and generates an assembly
      Python
      •
      MIT License
      •1•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • grassroots-web-portal-static-onepage

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • grassroots-service-marti

      Public
      A service to integrate Grassroots Field Trials and MARTI data
      C
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 7, 2024Oct 7, 2024