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    655 repositories

    • sage-monorepo

      Public
      Where OpenChallenges, Schematic, and other Sage open source apps are built
      angularopenapischematicmonorepofull-stackfairdeveloper-experiencenxagoraspecification-first
      TypeScript
      •
      Apache License 2.0
      •12•23•151•5•Updated Jan 10, 2025Jan 10, 2025

    • synapsePythonClient

      Public
      Programmatic interface to Synapse services for Python
      synapsepython
      Python
      •
      Apache License 2.0
      •68•69•3•4•Updated Jan 9, 2025Jan 9, 2025

    • snowflake

      Public
      Snowflake Administration, Transformations, and Analytics
      snowflake
      Python
      •
      Apache License 2.0
      •4•5•0•4•Updated Jan 9, 2025Jan 9, 2025

    • synapse-web-monorepo

      Public
      Monorepo for Synapse Web projects
      TypeScript
      •23•5•3•28•Updated Jan 9, 2025Jan 9, 2025

    • SynapseWebClient

      Public
      The web client of the Synapse REST service core
      JavaScript
      •
      Apache License 2.0
      •37•23•1•7•Updated Jan 9, 2025Jan 9, 2025

    • schematic

      Public
      Package for biomedical data model and metadata ingress management
      schemabiomedical-informaticsdata-ingress
      Python
      •
      MIT License
      •26•22•0•5•Updated Jan 9, 2025Jan 9, 2025

    • Genie

      Public
      Validation and processing of GENIE files
      pythonetlgeniedpecomponc
      Python
      •
      MIT License
      •9•12•1•4•Updated Jan 9, 2025Jan 9, 2025

    • data_curator-infra

      Public
      CDK-based template for deploying a containerized application to AWS
      Python
      •6•1•0•0•Updated Jan 9, 2025Jan 9, 2025

    • data_curator

      Public
      Data and metadata ingress app
      R
      •
      Apache License 2.0
      •20•10•49•0•Updated Jan 9, 2025Jan 9, 2025

    • data_curator_config

      Public
      Project configurations for the Data Curator App
      21•2•0•0•Updated Jan 8, 2025Jan 8, 2025

    • genie-bpc-pipeline

      Public
      GENIE BPC pipeline scripts
      genie
      R
      •
      MIT License
      •1•2•0•4•Updated Jan 8, 2025Jan 8, 2025

    • challengeutils

      Public
      Synapse challenge utility functions
      pythonbenchmarkingchallengesynapsedream
      Python
      •
      Apache License 2.0
      •10•4•0•0•Updated Jan 7, 2025Jan 7, 2025

    • Synapse-Stack-Builder

      Public
      Project for building a complete Synapse Stack
      Java
      •
      Apache License 2.0
      •20•5•0•5•Updated Jan 7, 2025Jan 7, 2025

    • GENIE-Sponsored-Projects

      Public
      This repository contains processing code for GENIE sponsored projects used for creating cBioPortal files
      genie
      Python
      •
      MIT License
      •1•5•5•2•Updated Jan 7, 2025Jan 7, 2025

    • aws-infra

      Public
      Global Sage Bionetworks AWS Infrastructure
      scipool
      Jinja
      •
      Apache License 2.0
      •14•8•0•1•Updated Jan 7, 2025Jan 7, 2025

    • agora-data-tools

      Public
      A place for Agora's ETL and Data Testing
      Jupyter Notebook
      •
      Apache License 2.0
      •3•1•0•1•Updated Jan 7, 2025Jan 7, 2025

    • genie-main-200k

      Public
      A subset of analyses accompanying the "200k" paper (celebrating 200,000 samples milestone in GENIE). Only analyses run by Sage people are currently included.
      R
      •0•0•0•0•Updated Jan 5, 2025Jan 5, 2025

    • genie-bpc-bladder-landscape-manu

      Public
      Analyses related to the GENIE BPC Bladder cohort. Intended for a landscape manuscript.
      R
      •0•0•0•0•Updated Jan 5, 2025Jan 5, 2025

    • Synapse-Repository-Services

      Public
      The Synapse Repository Services project is the home of the JSON REST web services for Synapse.
      Java
      •
      Apache License 2.0
      •54•36•0•7•Updated Jan 4, 2025Jan 4, 2025

    • aws-htan-infra

      Public
      AWS CloudFormation templates for deploying HTAN infrastructure
      Apache License 2.0
      •5•1•1•0•Updated Jan 3, 2025Jan 3, 2025

    • Sage_Website_public_assets

      Public
      Public assets needed for the Sage Website
      HTML
      •0•0•0•0•Updated Jan 2, 2025Jan 2, 2025

    • shiny-base

      Public
      Base Docker image for Shiny applications
      Dockerfile
      •1•0•0•1•Updated Jan 1, 2025Jan 1, 2025

    • Agora

      Public
      TypeScript
      •
      MIT License
      •13•7•0•12•Updated Dec 19, 2024Dec 19, 2024

    • agora-data-manager

      Public
      Tool to manage agora data
      Shell
      •
      Apache License 2.0
      •9•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • core-models

      Public
      Sage repository for data models and core models work
      Python
      •1•0•3•0•Updated Dec 19, 2024Dec 19, 2024

    • Exceptional-Longevity

      Public
      Repository to store scripts for data curation and backend portal drivers for the ELITE Portal.
      R
      •0•1•0•0•Updated Dec 19, 2024Dec 19, 2024

    • agora2-infra

      Public
      Jinja
      •
      Apache License 2.0
      •2•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • recover

      Public
      A data pipeline for processing data from the RECOVER project.
      Python
      •
      Apache License 2.0
      •1•5•0•0•Updated Dec 13, 2024Dec 13, 2024

    • BridgeServer2

      Public
      Bridge Server 2.0 running on Spring Boot
      Java
      •
      Other
      •22•5•0•1•Updated Dec 13, 2024Dec 13, 2024

    • nbconvert-webapp

      Public
      Converts ipynb file into html. Packaged for Lambda deployment
      Python
      •2•0•0•0•Updated Dec 5, 2024Dec 5, 2024