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- An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
- An awesome microRNA-sequencing pipeline
- Clinical Whole Genome and Exome Sequencing Pipeline
- One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.
- Metagenomics and Metatranscriptomics pipeline
- A rapid pipeline for targeted ONT monkeypox sequencing
project-template
Public templateAn awesome, minimal github template for your projectsbrakerMake
Publicmethyl-seek
Publicdrep
Publicparabricks-benchmark
Publicbaseline
Public templateervx
PublicEndogenous Retrovirus Expression Pipeline for Human and Mouse for use with bulk RNAnanite
PublicA streamlined Oxford Nanopore Viral Metagenomics PipelineRNA-seek
PublicHiIP
Publicassembly-seek
Publicweave
PublicAn awesome BCL demultiplexing and FastQ quality-control pipelinechromoscope
Publicprofiles
PubliccfChIP-seek
Public archivecell-free ChIP-seq pipelinemodr
PublicAn awesome Oxford Nanopore Pipeline for direct RNA-sequencingmetavirs
PublicViral Metagenomics Assembly and Annotation Pipelinesnakevision
Publiccyte-seek
PublicAwesome single-cell CITE-sequencing PipelinescErvx
PublicEndogenous Retrovirus Expression Pipeline for Human and Mouse for use with data from 10x genomics (bam files)GRS_SC10X
Public