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    22 repositories

    • NovembreLab.github.io

      Public
      Novembre Lab Website
      SCSS
      •1•1•3•0•Updated Oct 22, 2024Oct 22, 2024

    • plink-ng

      Public
      A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.
      C
      •126•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • feems

      Public
      Jupyter Notebook
      •
      MIT License
      •14•16•15•1•Updated Jun 30, 2023Jun 30, 2023

    • ggv

      Public
      websitedata-visualization
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •6•7•9•0•Updated Mar 27, 2023Mar 27, 2023

    • ENCprime

      Public
      ENCprime : Command-line utility for measuring codon bias. Implements methods of Novembre (2002) Mol Biol Evol 19 (8): 1390-1394.
      methods
      C
      •4•0•0•0•Updated Dec 9, 2021Dec 9, 2021

    • montecarloop

      Public
      Monte Carlo Simulation Utility
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 22, 2021Aug 22, 2021

    • HGDP_PopStruct_Exercise

      Public
      A classroom exercise using HGDP SNP data to introduce population structure concepts
      workshopteaching-materials
      OpenEdge ABL
      •16•13•4•0•Updated Jul 27, 2021Jul 27, 2021

    • admixture

      Public
      Repository for the admixture software
      1•6•5•0•Updated Apr 27, 2020Apr 27, 2020

    • coal-lab

      Public
      Lab for HVD
      Jupyter Notebook
      •3•0•0•0•Updated Apr 27, 2020Apr 27, 2020

    • ancient-sardinia

      Public
      Python
      •1•2•0•0•Updated Feb 24, 2020Feb 24, 2020

    • PCAviz

      Public
      An R package to help in plotting PCA results nicely.
      HTML
      •
      GNU General Public License v3.0
      •5•13•5•0•Updated Jan 16, 2020Jan 16, 2020

    • eems-around-the-world

      Public
      Repo to analyze population genetic data with many different methods
      structuredata-visualizationpopulation-geneticsadmixtureprinciple-component-analysissnakemake-workflow
      R
      •8•15•0•0•Updated Oct 23, 2019Oct 23, 2019

    • 1000genomes_Selection_Exercise

      Public
      1000 Genomes Selection Exercise
      teaching-materialsworkshop
      Shell
      •8•8•5•1•Updated Aug 15, 2019Aug 15, 2019

    • intro_genotype_proportions_workshop

      Public
      Intro to RStudio and basic population genetics based on inspecting genotype proportions
      workshopteaching-materials
      2•1•1•0•Updated Aug 14, 2019Aug 14, 2019

    • RGGV

      Public
      R package for GGV mapping.
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 7, 2018Jun 7, 2018

    • ancpy

      Public
      A python package for ancient DNA
      Python
      •0•0•6•0•Updated Apr 6, 2018Apr 6, 2018

    • eems-merge

      Public
      Python
      •0•1•0•0•Updated Apr 3, 2018Apr 3, 2018

    • imputation_exercise

      Public
      Introductory Workshop for Imputation and GWAS
      workshopteaching-materials
      Shell
      •1•4•0•0•Updated Apr 15, 2017Apr 15, 2017

    • ggv-api

      Public
      Python
      •0•1•1•0•Updated Oct 26, 2016Oct 26, 2016

    • Novembre_etal_2008_misc

      Public
      Resources related to Novembre et al (2008) Nature 456:98-101
      data
      7•10•1•0•Updated Apr 25, 2016Apr 25, 2016

    • raddle

      Public
      The Raddle software for Rare-Allele-based Distance of Dispersal Estimation, based on Novembre & Slatkin (2009)
      methods
      C
      •1•0•0•0•Updated Jun 28, 2015Jun 28, 2015

    • isoscatR

      Public
      R package for smoothed and continuous assignment testing (SCAT) of genetic samples
      Shell
      •5•0•0•0•Updated Mar 4, 2015Mar 4, 2015