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    74 repositories

    • TaxoBench

      Public
      A framework container to enable benchmark comparison of taxonomic classifiers including synthetic data sets to compare tools against.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • variant-list-optimizer

      Public
      Right size the list of variants.
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • SciducTainer

      Public template
      Minimal example (template) repo which includes files to interface with Sciduct job service.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • ray-hpc-workflows

      Public
      HPC workflows using Ray
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • CoPe-Data-Store

      Public
      Apache License 2.0
      •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • rsv-scenario-modeling-hub

      Public
      RSV Scenario Modeling Hub (UVA NSSAC fork)
      R
      •
      MIT License
      •19•0•0•0•Updated Oct 10, 2024Oct 10, 2024

    • escape-abm

      Public
      ESCAPE: Epidemic Simulator Compiler and Programming Environment
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 30, 2024Sep 30, 2024

    • Parallel_Compute_Engine

      Public
      Python
      •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • jupyterlab-esl

      Public
      ESL support for Jupyter Lab.
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • tree-sitter-esl

      Public
      Tree sitter grammar for Epidemic Simulator Language (ESL)
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • flu-smh-escape

      Public
      Clone of Flu Scenario Modeling Hub Repo for ESCAPE model results
      R
      •23•0•0•0•Updated Sep 3, 2024Sep 3, 2024

    • EpiHiper

      Public
      C++
      •
      MIT License
      •2•3•2•0•Updated Aug 15, 2024Aug 15, 2024

    • EXCEADS-k8

      Public
      EXCEADS deployments
      Shell
      •0•0•0•0•Updated Aug 8, 2024Aug 8, 2024

    • covid19-smh-research

      Public
      COVID-19 Scenario Modeling Hub - Research
      R
      •
      MIT License
      •8•0•0•0•Updated Aug 6, 2024Aug 6, 2024

    • EpiHiper-Schema

      Public
      The JSON schema for all EpiHiper input including a validator
      nodejsjsonjson-schemaepihiperschemasepihiper-schema
      JavaScript
      •
      Apache License 2.0
      •1•0•0•0•Updated Jul 21, 2024Jul 21, 2024

    • FluSight-forecast-hub

      Public
      R
      •
      MIT License
      •55•0•0•0•Updated Jul 17, 2024Jul 17, 2024

    • CoPe-data-integration

      Public
      Apache License 2.0
      •0•0•0•0•Updated Jun 26, 2024Jun 26, 2024

    • PatchSim

      Public
      Code for simulating the metapopulation SEIR model. Sample network for US national simulation included.
      Jupyter Notebook
      •
      MIT License
      •17•24•2•0•Updated Jun 24, 2024Jun 24, 2024

    • SIMBA_Driver

      Public
      Driving component for the SIMBA system.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 16, 2024Jun 16, 2024

    • PEpiTA

      Public
      Phase-based Epidemic Time series Analyzer.
      Jupyter Notebook
      •
      MIT License
      •2•4•3•0•Updated Jun 5, 2024Jun 5, 2024

    • CINES

      Public
      CINES project repository
      JavaScript
      •
      Other
      •0•1•58•23•Updated May 22, 2024May 22, 2024

    • covid19-scenario-modeling-hub

      Public
      COVID-19 Scenario Modeling Hub
      HTML
      •46•0•0•0•Updated May 8, 2024May 8, 2024

    • SIMBA_store

      Public
      Distributed and extensible data storage for SIMBA
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 1, 2024May 1, 2024

    • MambaSCIF_node

      Public
      Base Docker image built from mambascif and adding nodejs
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Mar 28, 2024Mar 28, 2024

    • parsl-mpi-hello-world-rivanna

      Public
      Hello World with MPI+Parsl on Rivanna
      Python
      •0•0•0•0•Updated Jan 24, 2024Jan 24, 2024

    • templated_configuration_system

      Public
      Generic system for defining configuration file templates, describing the UI for collecting contextual information for said templates, and validation of individual template_contexts, and template_context_sets
      JavaScript
      •
      Apache License 2.0
      •0•0•1•0•Updated Oct 18, 2023Oct 18, 2023

    • nssacPreCommitHook

      Public
      A git pre commit hook used to maintain license and copyright information in source files.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 28, 2023Aug 28, 2023

    • covid19-scenario-hub-europe

      Public
      European Covid-19 Scenario Hub.
      R
      •
      Other
      •17•0•0•0•Updated Aug 20, 2023Aug 20, 2023

    • vic-cropsyst-runner

      Public
      A framework to run VIC-CropSyst and perform parameter scans
      Python
      •0•0•0•0•Updated Jun 27, 2023Jun 27, 2023

    • Flusight-forecast-data

      Public
      R
      •
      Other
      •66•0•0•0•Updated Jun 8, 2023Jun 8, 2023