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    81 repositories

    • eicu-code

      Public
      Code and website related to the eICU Collaborative Research Database
      healthcarephysionetehreicu-crdmimicdatabase
      Jupyter Notebook
      •
      MIT License
      •217•323•97•8•Updated Dec 19, 2024Dec 19, 2024

    • physionet-build

      Public
      The new PhysioNet platform.
      physionet
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •20•56•405•30•Updated Dec 13, 2024Dec 13, 2024

    • wfdb-python

      Public
      Native Python WFDB package
      pythonecgphysionetwfdbekg
      Jupyter Notebook
      •
      MIT License
      •303•753•75•11•Updated Nov 27, 2024Nov 27, 2024

    • license-and-dua

      Public
      The PhysioNet Data Use Agreement and License
      duaphysionetlicenseagreement
      MIT License
      •12•6•10•1•Updated Oct 29, 2024Oct 29, 2024

    • mimic-iv-demo-omop

      Public
      MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.
      Python
      •
      Apache License 2.0
      •25•1•0•1•Updated Oct 29, 2024Oct 29, 2024

    • aws-physionet-open-data

      Public
      Script for generating the PhysioNet pages in the AWS Open Data Registry
      Python
      •
      MIT License
      •0•1•0•1•Updated Oct 8, 2024Oct 8, 2024

    • sccm-datathon

      Public
      Resources for the Society of Critical Care Medicine (SCCM) Datathon
      icusccmcritical-caredatathonmimiceicu
      Jupyter Notebook
      •
      MIT License
      •9•21•0•2•Updated Sep 24, 2024Sep 24, 2024

    • plibflac

      Public
      Read and write FLAC audio files in Python
      C
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 23, 2024Sep 23, 2024

    • mimic-code

      Public
      MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases
      icuphysionetmimic-iiicritical-care
      Jupyter Notebook
      •
      MIT License
      •1.5k•2.7k•238•14•Updated Aug 26, 2024Aug 26, 2024

    • bst209-2024

      Public
      Course materials for BST209
      HTML
      •
      MIT License
      •1•3•0•0•Updated Aug 13, 2024Aug 13, 2024

    • mimic-website

      Public
      Website for the MIMIC Critical Care Database (currently version MIMIC-III)
      icuphysionetehrmimic-iiimimic
      CSS
      •
      MIT License
      •113•106•41•4•Updated Jun 26, 2024Jun 26, 2024

    • hack-aotearoa

      Public
      Sample code for Hack Aotearoa 2023
      Jupyter Notebook
      •
      MIT License
      •6•9•0•2•Updated Jun 17, 2024Jun 17, 2024

    • bidmc-datathon

      Public
      Materials for the BIDMC datathon (Sat 29 Feb 2020)
      bostoneicu-crddatathonmimiceicubidmc
      Jupyter Notebook
      •
      MIT License
      •3•11•0•2•Updated Jun 17, 2024Jun 17, 2024

    • datathon-package

      Public
      Pip installable package containing helper functions for datathons
      Python
      •
      MIT License
      •1•5•0•2•Updated Jun 17, 2024Jun 17, 2024

    • the-bias-glossary

      Public
      0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

    • mimic-omop

      Public
      Mapping the MIMIC-III database to the OMOP schema
      data-modelmimic-iiiomop
      PLpgSQL
      •
      MIT License
      •47•129•40•6•Updated Mar 17, 2024Mar 17, 2024

    • datathon-gossis

      Public
      Resources for the GOSSIS datathon in Pittsburgh
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Feb 27, 2024Feb 27, 2024

    • citation-tracker

      Public
      Tools for tracking citations to MIMIC, PhysioNet etc.
      Jupyter Notebook
      •
      MIT License
      •2•4•1•0•Updated Dec 10, 2023Dec 10, 2023

    • cwmed

      Public
      A Python package that facilities the conversion of clinical terminology between two different coding systems for interoperability.
      Python
      •
      MIT License
      •0•1•0•0•Updated Oct 18, 2023Oct 18, 2023

    • waveform-annotation

      Public
      Platform for annotating physiological waveform data.
      Python
      •4•12•2•2•Updated Oct 10, 2023Oct 10, 2023

    • mimic-echo

      Public
      Structured data from echocardiogram reports
      MIT License
      •0•0•0•0•Updated Sep 4, 2023Sep 4, 2023

    • scrub_faces

      Public
      Scrub/blur faces in a dataset of images.
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 21, 2023Jul 21, 2023

    • physionet

      Public
      A collection of tools for working with the PhysioNet repository.
      Python
      •
      MIT License
      •17•69•97•0•Updated Jun 11, 2023Jun 11, 2023

    • lcp-website

      Public
      Website for the LCP Laboratory https://lcp.mit.edu
      HTML
      •0•1•2•2•Updated May 1, 2023May 1, 2023

    • mimic-iv-datathon

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Apr 24, 2023Apr 24, 2023

    • vancomycin-nephrotoxicity

      Public
      Study in eICU-CRD about vancomycin and associated nephrotoxicity
      Jupyter Notebook
      •4•6•2•0•Updated Mar 3, 2023Mar 3, 2023

    • critical-data

      Public
      Website for critical-data
      CSS
      •
      MIT License
      •6•8•3•1•Updated Jan 26, 2023Jan 26, 2023

    • metaann

      Public
      Collaborative labelling of events in physiological waveforms
      C
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Sep 29, 2022Sep 29, 2022

    • oracle2postgres

      Public
      Migrate data from an Oracle database to a Postgres database
      pythondatabasemigrationora2pgpostgresoracle
      Python
      •
      MIT License
      •21•30•3•0•Updated Jun 23, 2022Jun 23, 2022

    • gossis

      Public
      Extracting consistent concepts from multiple databases
      Jupyter Notebook
      •6•12•16•0•Updated Apr 13, 2022Apr 13, 2022