Repositories list

• viro.fluidics

  Public
  GNU General Public License v3.0

  •1•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• sporeAI

  Public
  predicting sporulation

  Jupyter Notebook

  •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• qbiodiversity

  Public
  Website for Quantitative Biodiversity course.

  HTML

  •2•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• Entrapped-omics

  Public
  1•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• VirosporeQuant

  Public
  1•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• lennonlab.github.io

  Public
  lennon lab website

  HTML

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Nov 13, 2024Nov 13, 2024

• symcel

  Public
  Bacillus microcalorimetry and growth

  GNU Affero General Public License v3.0

  •2•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• astrodorm

  Public
  GNU Affero General Public License v3.0

  •2•0•0•0•Updated Sep 13, 2024Sep 13, 2024

• residence-time-test

  Public
  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Sep 12, 2024Sep 12, 2024

• SporeCosts

  Public
  Final repository for the spore cost project.

  R

  •

  MIT License

  •2•0•0•0•Updated Aug 29, 2024Aug 29, 2024

• Rhizo_phage

  Public
  Rhizobia-phage interaction project

  Shell

  •1•0•0•0•Updated Aug 25, 2024Aug 25, 2024

• division.labor

  Public
  GNU General Public License v3.0

  •2•0•0•1•Updated Aug 19, 2024Aug 19, 2024

• Rpf

  Public
  Standard ML

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Aug 9, 2024Aug 9, 2024

• spore-life

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Jul 2, 2024Jul 2, 2024

• rhizo.rb.tnseq

  Public
  HTML

  •

  GNU General Public License v3.0

  •3•0•0•0•Updated May 16, 2024May 16, 2024

• Bifidobacterium

  Public
  Adaptive evolution of probiotics

  HTML

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Mar 3, 2024Mar 3, 2024

• sporeCostsVer2

  Public
  Calculation of energetic costs of spore formation based on protein abundance and gene expression data.

  R

  •1•0•0•0•Updated Dec 13, 2023Dec 13, 2023

• SporeMut

  Public
  mutation accumulation in dormancy

  R

  •2•0•0•0•Updated Dec 13, 2023Dec 13, 2023

• MetabolicDistribution

  Public
  GNU General Public License v3.0

  •2•0•0•0•Updated Oct 27, 2023Oct 27, 2023

• globalmacroevo

  Public
  R

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Aug 3, 2023Aug 3, 2023

• XevoLong

  Public
  Experimental evolution of longevity

  HTML

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Aug 2, 2023Aug 2, 2023

• MinimalCell

  Public
  HTML

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Jul 27, 2023Jul 27, 2023

• coevo-seedbank-seq

  Public
  sequencing data analysis

  GDScript

  •

  GNU General Public License v3.0

  •4•2•0•0•Updated Jun 26, 2023Jun 26, 2023

• coevo-seedbank-ancestors

  Public
  Comparison of WT and mutant (spoIIE-KO) ancestral strains

  HTML

  •

  GNU General Public License v3.0

  •1•3•0•0•Updated May 11, 2023May 11, 2023

• coevolution-ts

  Public
  Time series analyses of population densities from experimental coevolution with a seed bank.

  HTML

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated May 10, 2023May 10, 2023

• PhosTrait

  Public
  Generalist and specialist P strategies

  HTML

  •4•0•0•0•Updated Mar 24, 2023Mar 24, 2023

• Phage_spore_adsorption

  Public
  analysis of phage adsorption assay with spores and vegatative cells

  R

  •1•0•0•0•Updated Feb 8, 2023Feb 8, 2023

• spore_amg

  Public
  Sporulation gene in viromes

  HTML

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Jan 31, 2023Jan 31, 2023

• RhizoTradeoffs

  Public
  Data analyses associated with determining the trade-offs among rhizobia symbionts that vary in symbiotic quality

  1•0•0•0•Updated Jan 31, 2023Jan 31, 2023

• Lab-Website

  Public
  HTML

  •2•1•0•0•Updated Nov 26, 2022Nov 26, 2022