sporeCostsVer2

Calculation of energetic costs of spore formation based on protein abundance and gene expression data.

The flat files are formatted as follows: "Description \t data1,data2,data3.."

To parse the file you first split by tabs, then split the second object by commas to get the data array.

Outgroup genome genome_562

consumer_resource_spore_model.tsv

• Line 1 = Hours
• Line 2 = Resource concentration
• Line 3 = Cell concentration
• Line 4 = Spore concentration

cr_spores_efficiency.png

• Line 1 = Range of possible spore/cell ATP ratios
• Line 2 = Sporulation efficiencies

evo_ratio.tsv

• Line 1 = Range of deletion sizes
• Line 2 = Ratio of rates for lower Ne
• Line 3 = Ratio of rates for higher Ne

The neutral expectation (horizontal line) is 0.2668621700879765

evo_ratio_conditional.tsv

• Line 1 = Range of deletion sizes
• Line 2 = Ratio of rates for lower Ne
• Line 3 = Ratio of rates for higher Ne
• Line 4 = Neutral expectation of ratio