Repositories list

• hibberdlab.github.com

  Public
  lab website

  CSS

  •4•6•8•0•Updated Aug 6, 2024Aug 6, 2024

• snap

  Public
  Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

  C++

  •

  Apache License 2.0

  •66•0•0•0•Updated Jan 9, 2017Jan 9, 2017

• transrate

  Public
  Quality assessment and comparison of transcriptome assemblies

  CSS

  •

  Other

  •34•0•0•0•Updated Jun 6, 2016Jun 6, 2016

• transrate-test-files

  Public
  0•0•0•0•Updated Feb 6, 2015Feb 6, 2015

• bamtools

  Public
  C++ API & command-line toolkit for working with BAM data

  C++

  •

  MIT License

  •152•0•0•0•Updated Oct 7, 2014Oct 7, 2014

• cyperus_pipeline

  Public
  Pipeline for Cyperus four-species whole-leaf de-novo RNAseq experiment

  Ruby

  •

  MIT License

  •0•1•0•0•Updated Jun 18, 2014Jun 18, 2014

• rnaseq_tools

  Public
  miscellaneous tools for analysis of RNA-seq data

  Ruby

  •

  MIT License

  •1•3•0•1•Updated Apr 7, 2014Apr 7, 2014

• flaveria_pipeline

  Public
  Pipeline for 4-species flaveria developmental gradient de-novo RNAseq experiment

  Ruby

  •

  MIT License

  •1•1•0•0•Updated Mar 31, 2014Mar 31, 2014

• assemblytools

  Public
  Miscellaneous tools for transcriptome assembly

  Ruby

  •0•2•0•0•Updated Nov 15, 2013Nov 15, 2013

• seqtools

  Public
  Tools for manipulating biological sequence data

  Ruby

  •0•2•0•0•Updated Jul 20, 2013Jul 20, 2013