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@GenomicMedLab The Wagner/Chaudhari Laboratories at the Institute for Genomic Medicine

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    32 repositories

    • bioinformatics-python

      Public
      This repo contains exercises for the CSHL 2024 Seqtec course
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • variant-interpretation

      Public
      This repo contains exercises for the CSHL 2024 Seqtec course
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • cool-seq-tool

      Public
      bioinformaticsgenomics
      Python
      •
      MIT License
      •0•4•37•1•Updated Nov 14, 2024Nov 14, 2024

    • software-templates

      Public
      Cookiecutter templates for lab software projects
      Python
      •
      MIT License
      •0•0•14•0•Updated Nov 12, 2024Nov 12, 2024

    • wags-tails

      Public
      Data acquisition tools for Wagnerds
      bioinformaticsgenomics-data
      Python
      •
      MIT License
      •0•0•13•0•Updated Nov 12, 2024Nov 12, 2024

    • dgipy

      Public
      Python client for fast access to the Drug-Gene Interaction Database (DGIDb)
      Python
      •
      MIT License
      •0•0•13•0•Updated Nov 11, 2024Nov 11, 2024

    • CSHL-Variant-Representation-and-Annotation

      Public
      This repo contains exercises for the CSHL 2024 Seqtec course
      MIT License
      •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • regbot

      Public
      Python
      •
      MIT License
      •0•1•3•0•Updated Nov 5, 2024Nov 5, 2024

    • gks-metaschema

      Public
      Tools and scripts for parsing the GKS standards metaschemas
      Python
      •
      Apache License 2.0
      •3•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • genomicmedlab.org

      Public
      Building a lab website
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • variation-normalizer-manuscript

      Public
      Issue tracker for Variation Normalizer manuscript work
      Jupyter Notebook
      •
      MIT License
      •0•2•4•0•Updated Oct 25, 2024Oct 25, 2024

    • r-dgidb

      Public
      In-progress R wrapper for DGIdb
      R
      •0•1•3•0•Updated Oct 21, 2024Oct 21, 2024

    • gregor

      Public
      Handle GREGoR Consortium tasks/code
      Python
      •
      MIT License
      •0•0•10•0•Updated Oct 16, 2024Oct 16, 2024

    • seqrepo-rest-service

      Public
      OpenAPI-based REST interface to biological sequences and sequence metadata
      Python
      •
      Apache License 2.0
      •6•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • fda-nlp

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•7•0•Updated Sep 18, 2024Sep 18, 2024

    • vrs-annotator

      Public
      Annotates VCF Variants with VRS IDs
      Jupyter Notebook
      •3•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • agct

      Public
      Another Genome Conversion Tool: Python frontend to Rust chainfile crate
      bioinformaticsgenomics
      Python
      •
      MIT License
      •0•2•1•0•Updated Aug 8, 2024Aug 8, 2024

    • clinvar-this

      Public
      ClinVar Submission API Made Easy
      Python
      •
      MIT License
      •2•0•0•0•Updated Jun 18, 2024Jun 18, 2024

    • civic-meeting

      Public
      Repo for advertising and organizing CIViC hackathon/meeting activities
      3•0•0•0•Updated Mar 12, 2024Mar 12, 2024

    • dcd_mapping

      Public
      AVE DCD Mapping
      Jupyter Notebook
      •
      MIT License
      •4•0•0•0•Updated Feb 1, 2024Feb 1, 2024

    • therapy_normalization_analysis

      Public
      Jupyter Notebook
      •0•0•3•0•Updated Jan 19, 2024Jan 19, 2024

    • fantasy-football-rulebook

      Public
      Rulebook for the annual Griffith / Wagner Labs Fantasy Football League
      Creative Commons Zero v1.0 Universal
      •1•0•1•0•Updated Aug 21, 2023Aug 21, 2023

    • w3id.org

      Public
      Website source code for w3id.org.
      HTML
      •1.2k•0•0•0•Updated Apr 4, 2023Apr 4, 2023

    • schema-automator

      Public
      Automated assistance for the schema development lifecycle
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •13•0•0•0•Updated Aug 23, 2022Aug 23, 2022

    • MaveDB

      Public
      MaveDB database web application
      Python
      •
      GNU Affero General Public License v3.0
      •5•0•0•0•Updated Aug 10, 2022Aug 10, 2022

    • wagner-lab-issues

      Public
      General issues and tasks for the Wagner Lab.
      0•0•14•0•Updated Jun 1, 2022Jun 1, 2022

    • curated-gene-lists

      Public
      HTML
      •
      MIT License
      •0•0•4•0•Updated Mar 12, 2022Mar 12, 2022

    • tragedy

      Public
      Truly Resplendent Architecture for Genomic Evidence Discovery in YAML
      Python
      •
      Apache License 2.0
      •0•0•4•0•Updated Feb 24, 2022Feb 24, 2022

    • interop

      Public
      General discussion of topics related to interoperability
      HTML
      •4•0•0•0•Updated Dec 26, 2021Dec 26, 2021

    • phenopacket-schema

      Public
      Repository for the GA4GH inlined phenopacket schema
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •30•0•0•0•Updated May 7, 2021May 7, 2021