Repositories list

• prs_pipeline

  Public
  Pipeline for PRS computation integrating diverse PRS algorithms into a unique Snakemake workflow.

  geneticsbioinformatics-pipelinepolygenic-risk-scores

  R

  •

  Apache License 2.0

  •0•1•0•0•Updated Nov 26, 2024Nov 26, 2024

• ifb_bioconductor_docker

  Public
  Docker containers based on Bioconductor's docker with additional software used by the Institute for Biomedicine (IfB) from Eurac Research.

  Dockerfile

  •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• lcms-standards

  Public
  Measurements of standard compounds in LC/MS setups and configurations at Eurac Research

  metabolomics

  R

  •0•1•7•0•Updated Nov 21, 2024Nov 21, 2024

• chris_plasma_proteome

  Public
  General data analysis of the ScanningSWATH mass spectrometry-based plasma proteomics data of CHRIS.

  TeX

  •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• finemap_pipeline

  Public
  Python

  •

  MIT License

  •0•0•4•0•Updated Oct 24, 2024Oct 24, 2024

• metabo_chris_untargeted

  Public
  Repository for the pre-processing of the untargeted metabolomics data from CHRIS

  TeX

  •0•0•1•0•Updated Oct 18, 2024Oct 18, 2024

• tidyfr

  Public
  R interface to retrieve CHRIS data.

  R

  •1•1•2•1•Updated Oct 3, 2024Oct 3, 2024

• end-to-end-untargeted-metabolomics

  Public
  A simple end-to-end untargeted metabolomics analysis workflow

  TeX

  •0•7•5•0•Updated Aug 26, 2024Aug 26, 2024

• DigitalSpiralography

  Public
  Digital Spiralography

  Python

  •0•0•0•0•Updated Jul 10, 2024Jul 10, 2024

• RescueOMR

  Public
  batch Optical Mark Recognition without foresight

  Python

  •

  GNU Affero General Public License v3.0

  •9•39•4•0•Updated Apr 1, 2024Apr 1, 2024

• tblutils

  Public
  Text-based Table Utilities

  Perl

  •

  GNU General Public License v3.0

  •3•3•0•0•Updated Apr 1, 2024Apr 1, 2024

• clickmaster2000

  Public
  A tally counter for images

  Python

  •

  GNU General Public License v3.0

  •1•0•0•1•Updated Apr 1, 2024Apr 1, 2024

• CompMetaboTools

  Public
  Utility functions frequently used in analyses of the Computational Metabolomics Team

  R

  •0•4•1•0•Updated Jan 11, 2024Jan 11, 2024

• VAMS_vs_intraveinous

  Public
  Comparison of Volumetric Absorbtive Microsampling to venous blood sampling

  data-analysismetabolomics

  R

  •0•0•6•0•Updated Mar 17, 2023Mar 17, 2023

• mitra_short_term_stability

  Public
  HILIC-based untargeted metabolomics experiment to evaluate short-term stability of Neoteryx Mitra blood microsamples.

  TeX

  •0•0•0•0•Updated Mar 17, 2023Mar 17, 2023

• FamAgg

  Public
  This is the development version of the FamAgg Bioconductor package.

  geneticspedigree

  R

  •

  MIT License

  •2•0•8•0•Updated Mar 10, 2023Mar 10, 2023

• shinylocuszoom

  Public
  R

  •

  MIT License

  •0•1•0•0•Updated Nov 7, 2022Nov 7, 2022

• batch_centroid

  Public
  Utility functions to perform batch centroiding of profile mzML files using MSnbase

  metabolomics

  R

  •0•2•2•0•Updated May 24, 2022May 24, 2022

• isotopologues

  Public
  R

  •0•0•1•0•Updated May 13, 2022May 13, 2022

• mr.inflpd

  Public
  R

  •

  GNU General Public License v3.0

  •2•5•0•0•Updated Apr 6, 2022Apr 6, 2022

• MyRpkg

  Public
  My first R package trying to use git version control

  JavaScript

  •0•0•0•0•Updated Mar 20, 2022Mar 20, 2022

• personal_R_functions

  Public
  Some useful functions to study microbiome in the context of a population study

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 12, 2022Jan 12, 2022

• trainckdis.mr

  Public
  Repository for the MR session material of the TrainCKDis Summer School 2021

  JavaScript

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Jul 14, 2021Jul 14, 2021

• smhplot

  Public
  Sparkling Manhattan Plot

  Python

  •

  GNU Affero General Public License v3.0

  •0•1•0•0•Updated May 17, 2021May 17, 2021

• Microbiome

  Public
  The idea is that here you can find useful scripts and other documentation to process microbiome data

  R

  •0•0•1•0•Updated Aug 6, 2020Aug 6, 2020

• rvtests

  Public
  Rare variant test software for next generation sequencing data

  C++

  •42•0•0•0•Updated Oct 28, 2019Oct 28, 2019

• tecanFluentWorklists

  Public
  Scripts used for generating worklists for the Tecan Fluent based on data generated via the incredible liquid level detection

  Python

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Aug 31, 2018Aug 31, 2018

• mrmProcessing

  Public
  some automated functions for MRM mass spectrometry data processing

  Python

  •0•0•5•0•Updated Aug 24, 2017Aug 24, 2017

• biocResort

  Public
  Resorting a Biocrates injection list for Sciex machines

  metabolomics

  Python

  •

  MIT License

  •1•1•0•0•Updated Jul 27, 2017Jul 27, 2017