Cell Systems and Mechanobiology Lab, University of Melbourne

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16 repositories

ageing_heart_ecc
Public
Code to human simulate calcium transient and myofilament contraction
MATLAB
•0•0•0•0•Updated Mar 11, 2024Mar 11, 2024
1D-Dyad-Model-RyR-IP3R
Public
MATLAB
•0•0•0•0•Updated Mar 1, 2024Mar 1, 2024
fe_mesh_tools
Public
Meshes and scripts for Finite element modeling
Python
•2•1•0•0•Updated Aug 2, 2023Aug 2, 2023
CoarseGrainedCadherinActinDynamics
Public
A computational model of the effect of cadherin-actin interactions on cadherin cluster patterning
1•0•0•0•Updated Jun 16, 2022Jun 16, 2022
cardiovinci
Public
This repository is the official implementation of our paper "CardioVinci: building blocks for virtual cardiac cells using deep learning"
Python
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MIT License
•0•0•0•0•Updated May 23, 2022May 23, 2022
cell_cell_adhesion
Public
Python
•0•0•0•0•Updated Jan 10, 2022Jan 10, 2022
EM-stellar
Public
Jupyter Notebook
•
MIT License
•0•2•0•0•Updated Sep 30, 2020Sep 30, 2020
EM-net
Public
Jupyter Notebook
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MIT License
•1•2•0•0•Updated Jul 12, 2020Jul 12, 2020
compartmental_ECC_ETC
Public
A compartmental model of cytosolic ARVM calcium dynamics during ECC and ETC
MATLAB
•0•0•0•0•Updated Jun 12, 2020Jun 12, 2020
CardiacCalcium_FiniteElement
Public
3D FE Simulation of Calcium Dynamics within an 8-sarcomere model of a cardiomyocyte
Python
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Apache License 2.0
•2•0•0•0•Updated May 7, 2019May 7, 2019
CardiacCalcium_TestCaCLEAN
Public
Python
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Apache License 2.0
•2•0•0•0•Updated May 7, 2019May 7, 2019
cardiac_bioenergetics
Public
Spatiotemporal bioenergetics in the cardiac cell
atp computational-physiology finite-element-methods mitochondria bioenergetics creatine-kinase atp-hydrolysis cardiac-cells
Fortran
•3•0•0•0•Updated Jan 5, 2019Jan 5, 2019
sbfsem-cardiac-cell-segmenter-v2
Public
0•0•0•0•Updated Feb 6, 2018Feb 6, 2018
sbfsem-cardiac-cell-segmenter-v1
Public
sbf-sem-cardiac-cell-segmenter v1
image-processing finite-element-methods cardiac-cells sbf-sem
1•0•1•0•Updated Feb 6, 2018Feb 6, 2018
cardiac_ecc
Public
Code to simulate excitation-contraction coupling in cardiac cells using FE methods
computational-physiology calcium finite-element-methods cardiac-cells calcium-release
Fortran
•3•0•0•0•Updated Jan 24, 2018Jan 24, 2018
RyR-simulator
Public
Open-source code for simulating anatomically realistic distributions of RyR clusters in relation to cardiac cell contractile machinery.
spatial-data-analysis finite-element-methods cardiac-segmentation cardiac-cells data-extraction
R
•2•1•0•0•Updated Oct 2, 2017Oct 2, 2017